Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10866366	0.82[EUR][1000 genomes]
rs11944071	0.83[EUR][1000 genomes]
rs12502278	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12511715	0.88[CEU][hapmap]
rs1437840	0.88[CEU][hapmap]
rs1540471	0.88[CEU][hapmap]
rs1551664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1551665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058705	0.88[CEU][hapmap]
rs17058736	0.88[CEU][hapmap]
rs17058882	0.87[CEU][hapmap]
rs2043781	0.87[CEU][hapmap]
rs4695991	1.00[CEU][hapmap]
rs4696029	0.85[EUR][1000 genomes]
rs4696030	0.82[EUR][1000 genomes]
rs4696031	0.84[EUR][1000 genomes]
rs4696032	1.00[CEU][hapmap]
rs62329189	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62329191	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62340297	0.85[EUR][1000 genomes]
rs6841423	0.84[EUR][1000 genomes]
rs747493	0.88[CEU][hapmap]
rs750375	0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs750376	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7654998	0.84[EUR][1000 genomes]
rs7681059	0.82[EUR][1000 genomes]
rs7699074	0.88[CEU][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9997117	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173731400-173747400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:173737200-173742400	Weak transcription	Stomach Mucosa	stomach
3	chr4:173737400-173742000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:173737400-173742000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:173737400-173742200	Weak transcription	Fetal Intestine Small	intestine

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