Variant report

Variant	rs17058882
Chromosome Location	chr4:173691660-173691661
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10024969	0.89[CEU][hapmap]
rs10520242	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs11132959	0.85[EUR][1000 genomes]
rs11932974	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs12499966	0.95[EUR][1000 genomes]
rs12502034	0.95[EUR][1000 genomes]
rs12502278	0.88[CEU][hapmap]
rs12505471	0.95[EUR][1000 genomes]
rs12509227	0.95[EUR][1000 genomes]
rs12510770	0.95[EUR][1000 genomes]
rs12510844	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12511707	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs12511715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12513314	0.89[CEU][hapmap]
rs12643395	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12643816	0.89[CEU][hapmap]
rs12645440	0.89[CEU][hapmap];0.88[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12646897	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs12651320	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1347702	0.89[CEU][hapmap]
rs1437828	0.94[EUR][1000 genomes]
rs1437840	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1455130	0.88[CEU][hapmap]
rs1540468	0.89[CEU][hapmap]
rs1540471	1.00[CEU][hapmap]
rs1540472	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1551664	0.88[CEU][hapmap]
rs1551665	0.88[CEU][hapmap]
rs17058683	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17058705	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17058736	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17058752	0.89[CEU][hapmap]
rs17058802	0.89[CEU][hapmap]
rs17058886	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs1946797	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs2043781	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2118441	0.94[EUR][1000 genomes]
rs2125601	0.87[CEU][hapmap]
rs36081927	0.95[EUR][1000 genomes]
rs4522845	0.95[EUR][1000 genomes]
rs4695932	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4695991	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4696014	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs4696032	0.88[CEU][hapmap]
rs58774009	0.90[EUR][1000 genomes]
rs61077359	0.81[EUR][1000 genomes]
rs62330792	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62330815	0.95[EUR][1000 genomes]
rs62330816	0.95[EUR][1000 genomes]
rs62330818	0.92[EUR][1000 genomes]
rs62330819	0.95[EUR][1000 genomes]
rs62330820	0.95[EUR][1000 genomes]
rs6812449	0.95[EUR][1000 genomes]
rs6821734	0.87[EUR][1000 genomes]
rs6822579	0.85[EUR][1000 genomes]
rs6838201	0.95[EUR][1000 genomes]
rs6844200	0.88[CEU][hapmap]
rs747493	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7664183	0.95[EUR][1000 genomes]
rs7694886	0.95[EUR][1000 genomes]
rs837196	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9312527	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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