Variant report

Variant	rs17058736
Chromosome Location	chr4:173598461-173598462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10024969	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs10434280	0.84[CHB][hapmap]
rs10520242	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11132954	0.81[CHB][hapmap]
rs11132959	0.83[CHB][hapmap]
rs11932974	0.90[CEU][hapmap];0.86[TSI][hapmap]
rs12499966	0.84[EUR][1000 genomes]
rs12502034	0.84[EUR][1000 genomes]
rs12502278	0.89[CEU][hapmap]
rs12505471	0.84[EUR][1000 genomes]
rs12509227	0.84[EUR][1000 genomes]
rs12510199	1.00[CEU][hapmap]
rs12510770	0.84[EUR][1000 genomes]
rs12510844	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12511707	0.89[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs12511715	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12513314	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs12643395	0.90[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12643816	0.90[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap]
rs12645440	0.90[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs12646897	0.90[CEU][hapmap]
rs12651320	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1347698	0.90[CHB][hapmap]
rs1347702	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.86[TSI][hapmap]
rs1437828	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1437840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1455130	0.89[CEU][hapmap]
rs1540466	0.81[CHB][hapmap]
rs1540468	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs1540471	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs1540472	0.90[CEU][hapmap];0.90[CHB][hapmap];0.86[TSI][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1551664	0.89[CEU][hapmap]
rs1551665	0.89[CEU][hapmap]
rs1580110	0.84[CHB][hapmap]
rs17058683	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs17058705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17058752	0.90[CEU][hapmap];0.90[CHB][hapmap]
rs17058802	0.90[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap]
rs17058882	1.00[CEU][hapmap]
rs17058886	0.90[CEU][hapmap]
rs1946797	0.90[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2043781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118441	0.83[EUR][1000 genomes]
rs2125601	0.88[CEU][hapmap]
rs36081927	0.84[EUR][1000 genomes]
rs4522845	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs4569731	0.81[CHB][hapmap]
rs4695932	0.88[CEU][hapmap];0.89[CHB][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4695991	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4696014	0.90[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs4696032	0.89[CEU][hapmap]
rs58774009	0.88[EUR][1000 genomes]
rs61077359	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62330792	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62330815	0.84[EUR][1000 genomes]
rs62330816	0.84[EUR][1000 genomes]
rs62330818	0.81[EUR][1000 genomes]
rs62330819	0.84[EUR][1000 genomes]
rs62330820	0.84[EUR][1000 genomes]
rs6812449	0.84[EUR][1000 genomes]
rs6821734	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6827154	0.89[CHB][hapmap]
rs6838201	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6839760	0.84[CHB][hapmap]
rs6844200	0.88[CEU][hapmap];0.89[CHB][hapmap]
rs747493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7664183	0.84[EUR][1000 genomes]
rs7694886	0.84[EUR][1000 genomes]
rs837196	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9312527	0.90[CEU][hapmap];0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17058736	SAP30	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173598400-173599200	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links