Variant report

Variant	rs1347698
Chromosome Location	chr4:173626468-173626469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10016145	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10024969	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10025150	0.83[JPT][hapmap]
rs10025544	0.83[JPT][hapmap]
rs10031656	0.83[JPT][hapmap]
rs10034993	0.83[JPT][hapmap]
rs10520242	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10866355	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866357	0.83[AMR][1000 genomes]
rs10866363	0.82[JPT][hapmap]
rs1106651	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11132954	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs11132955	1.00[JPT][hapmap]
rs11132959	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs11132964	0.82[JPT][hapmap]
rs11132967	0.82[JPT][hapmap]
rs11132968	0.83[JPT][hapmap]
rs11132969	0.83[AMR][1000 genomes]
rs11132970	0.83[JPT][hapmap]
rs1158684	0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11722378	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725400	0.83[AMR][1000 genomes]
rs11932974	0.82[JPT][hapmap]
rs11942645	0.82[JPT][hapmap]
rs12498347	0.82[JPT][hapmap]
rs12501331	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12501554	0.83[JPT][hapmap]
rs12502339	0.83[JPT][hapmap]
rs12509744	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12511707	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12513314	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12642442	0.83[AMR][1000 genomes]
rs12643395	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12643742	0.83[JPT][hapmap]
rs12643816	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12645440	0.82[JPT][hapmap]
rs12646897	0.83[JPT][hapmap]
rs12647340	0.83[JPT][hapmap]
rs12649403	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12649426	0.83[JPT][hapmap]
rs12651320	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13107045	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13134194	0.81[AMR][1000 genomes]
rs13144747	0.83[JPT][hapmap]
rs13146563	0.84[JPT][hapmap]
rs1347700	0.83[JPT][hapmap]
rs1347702	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1347705	0.83[JPT][hapmap]
rs1370581	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437834	0.80[JPT][hapmap]
rs1437840	0.86[CHB][hapmap]
rs1437842	0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1540466	0.90[CHB][hapmap]
rs1540468	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1540471	0.81[CHB][hapmap]
rs1540472	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1548346	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1548347	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17058683	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17058705	0.85[CHB][hapmap]
rs17058736	0.90[CHB][hapmap]
rs17058752	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17058802	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17058876	0.82[JPT][hapmap]
rs17058886	0.83[JPT][hapmap]
rs17308839	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17308944	0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898554	0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1946797	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2043781	0.80[CHB][hapmap]
rs2043782	0.83[JPT][hapmap]
rs2043783	0.81[AMR][1000 genomes]
rs2118439	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2118442	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34464405	0.83[AMR][1000 genomes]
rs34567973	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34807167	0.81[AMR][1000 genomes]
rs35184155	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35280724	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35345168	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4522845	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4569731	0.90[CHB][hapmap]
rs4608790	0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4695771	0.83[JPT][hapmap]
rs4695932	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4696006	0.80[JPT][hapmap]
rs4696014	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4696015	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696016	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696022	0.81[AMR][1000 genomes]
rs4696028	0.82[AMR][1000 genomes]
rs55850929	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56069434	0.83[AMR][1000 genomes]
rs59569156	0.83[AMR][1000 genomes]
rs6553645	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6553657	0.83[JPT][hapmap]
rs6553658	0.81[AMR][1000 genomes]
rs6817631	0.82[JPT][hapmap]
rs6819441	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6819460	0.82[JPT][hapmap]
rs6822579	0.81[ASN][1000 genomes]
rs6827154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6842805	0.81[JPT][hapmap]
rs6844200	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6855645	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7376615	0.83[JPT][hapmap]
rs7378115	0.83[JPT][hapmap]
rs7438724	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs747493	0.86[CHB][hapmap]
rs748347	0.84[JPT][hapmap]
rs7659511	0.83[JPT][hapmap]
rs7672787	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681189	0.82[AMR][1000 genomes]
rs7685421	0.83[AMR][1000 genomes]
rs7688630	0.83[JPT][hapmap]
rs7691448	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs837196	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9312527	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9992822	0.83[JPT][hapmap]
rs9997085	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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