Variant report

Variant	rs10025544
Chromosome Location	chr4:173692156-173692157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10000589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024969	0.84[JPT][hapmap]
rs10025150	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10029787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031656	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10034980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034993	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10520242	0.82[JPT][hapmap]
rs10866356	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs10866357	0.85[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10866358	0.90[EUR][1000 genomes]
rs10866359	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866361	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10866362	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10866363	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866364	0.84[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10866365	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11132955	0.82[JPT][hapmap]
rs11132964	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132965	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132966	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132968	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132969	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11132970	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722378	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11725400	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11932974	1.00[JPT][hapmap]
rs11938551	0.85[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11939302	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501554	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502339	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509744	0.90[EUR][1000 genomes]
rs12511707	0.84[JPT][hapmap]
rs12513314	0.83[JPT][hapmap]
rs12642442	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12643395	0.84[JPT][hapmap]
rs12643742	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645440	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12646897	1.00[JPT][hapmap]
rs12651320	0.82[JPT][hapmap]
rs13107045	0.90[EUR][1000 genomes]
rs13134194	0.85[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13144747	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347698	0.83[JPT][hapmap]
rs1347702	0.82[JPT][hapmap]
rs1347705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370581	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1540468	0.84[JPT][hapmap]
rs1540472	0.82[JPT][hapmap]
rs1548346	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1548347	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17058683	0.84[JPT][hapmap]
rs17058752	0.84[JPT][hapmap]
rs17058876	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17058878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058886	1.00[JPT][hapmap]
rs1946797	0.82[JPT][hapmap]
rs2043782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2043783	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2083133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118442	0.90[EUR][1000 genomes]
rs28436909	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550329	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34464405	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34567973	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34807167	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35184155	0.89[EUR][1000 genomes]
rs35280724	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35345168	0.90[EUR][1000 genomes]
rs4420960	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422401	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4431209	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449390	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4470604	0.82[CEU][hapmap]
rs4546224	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4608790	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4695799	0.82[CEU][hapmap]
rs4695817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4695932	0.83[JPT][hapmap]
rs4696006	0.81[CEU][hapmap]
rs4696014	0.83[JPT][hapmap]
rs4696015	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4696016	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4696022	0.85[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4696028	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56069434	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59569156	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6553645	0.89[EUR][1000 genomes]
rs6553657	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs6553658	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67786990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6819441	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6819460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827154	0.89[JPT][hapmap]
rs6842382	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6842805	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6844200	0.81[JPT][hapmap]
rs7376615	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7378115	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7435993	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7438724	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7661180	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs7672787	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7679802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681189	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7685030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685421	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7688630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7689021	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs7691448	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs837196	0.82[JPT][hapmap]
rs9312534	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9992822	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997085	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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