Variant report

Variant	rs12502278
Chromosome Location	chr4:173737871-173737872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10024969	0.80[CEU][hapmap]
rs10520242	0.80[CEU][hapmap]
rs11932974	0.80[CEU][hapmap]
rs12510484	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12511411	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12511715	0.89[CEU][hapmap]
rs12513314	0.80[CEU][hapmap]
rs12643395	0.80[CEU][hapmap]
rs12643816	0.80[CEU][hapmap]
rs12645440	0.80[CEU][hapmap]
rs12646897	0.80[CEU][hapmap]
rs12651320	0.80[CEU][hapmap]
rs1347702	0.80[CEU][hapmap]
rs1437840	0.89[CEU][hapmap]
rs1540468	0.80[CEU][hapmap]
rs1540471	0.89[CEU][hapmap]
rs1540472	0.80[CEU][hapmap]
rs1551664	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1551665	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17058683	0.80[CEU][hapmap]
rs17058705	0.89[CEU][hapmap]
rs17058736	0.89[CEU][hapmap]
rs17058752	0.80[CEU][hapmap]
rs17058802	0.80[CEU][hapmap]
rs17058882	0.88[CEU][hapmap]
rs17058886	0.80[CEU][hapmap]
rs1946797	0.80[CEU][hapmap]
rs2043781	0.88[CEU][hapmap]
rs2125601	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4695991	1.00[CEU][hapmap]
rs4696014	0.80[CEU][hapmap]
rs4696032	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs62329189	0.85[EUR][1000 genomes]
rs62340299	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs747493	0.89[CEU][hapmap]
rs750375	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs750376	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7699074	0.88[CEU][hapmap]
rs837196	0.80[CEU][hapmap]
rs9312527	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173715000-173740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173731400-173747400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:173737200-173742400	Weak transcription	Stomach Mucosa	stomach
4	chr4:173737400-173742000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:173737400-173742000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:173737400-173742200	Weak transcription	Fetal Intestine Small	intestine

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