Variant report

Variant	rs7658615
Chromosome Location	chr4:173508180-173508181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1017667	0.85[CEU][hapmap]
rs10434280	0.88[CEU][hapmap]
rs11132951	0.96[CEU][hapmap]
rs11132952	1.00[CEU][hapmap]
rs1158684	0.89[CEU][hapmap]
rs12499508	0.85[CEU][hapmap]
rs12503858	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12642131	1.00[CEU][hapmap]
rs12647340	0.85[CEU][hapmap]
rs12649426	0.85[CEU][hapmap]
rs13102637	0.85[CEU][hapmap]
rs13123441	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13124556	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13144240	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13146563	0.86[CEU][hapmap]
rs1347700	0.85[CEU][hapmap]
rs1437834	0.85[CEU][hapmap]
rs1437842	0.82[CEU][hapmap]
rs1455132	0.86[CEU][hapmap]
rs1540470	0.85[CEU][hapmap]
rs1580110	0.86[CEU][hapmap]
rs17234582	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17307651	0.96[CEU][hapmap];0.90[YRI][hapmap]
rs17308839	0.89[CEU][hapmap]
rs17308944	0.89[CEU][hapmap]
rs1898554	0.89[CEU][hapmap]
rs2118439	0.85[CEU][hapmap]
rs35640087	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4476577	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692921	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4695771	0.96[CEU][hapmap];0.90[YRI][hapmap]
rs4695878	0.92[CEU][hapmap]
rs6822571	0.96[CEU][hapmap];0.91[YRI][hapmap]
rs6839760	0.85[CEU][hapmap]
rs6855645	0.96[CEU][hapmap];0.90[YRI][hapmap]
rs6858309	0.96[CEU][hapmap]
rs748347	0.86[CEU][hapmap]
rs7659511	0.85[CEU][hapmap]
rs7672525	0.85[CEU][hapmap]
rs7696315	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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