Variant report

Variant	rs4692921
Chromosome Location	chr4:173493404-173493405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11132951	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[TSI][hapmap]
rs11132952	0.85[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.89[TSI][hapmap]
rs1119637	0.81[CEU][hapmap]
rs1158684	0.84[MKK][hapmap]
rs12503858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642131	0.85[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap]
rs12647340	0.84[MKK][hapmap]
rs12649426	0.84[MKK][hapmap]
rs13102637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs13123441	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124556	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144240	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347700	0.82[MKK][hapmap]
rs1472370	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1472371	0.92[ASW][hapmap];0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.95[MKK][hapmap]
rs17234582	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17307651	0.81[CEU][hapmap]
rs180146	0.85[CHD][hapmap];0.89[JPT][hapmap]
rs35640087	0.83[EUR][1000 genomes]
rs4476577	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs4695771	0.81[CEU][hapmap]
rs6822571	0.81[CEU][hapmap]
rs6855645	0.81[CEU][hapmap]
rs6858309	0.80[CEU][hapmap];0.81[CHB][hapmap];0.86[TSI][hapmap]
rs7658615	0.85[CEU][hapmap]
rs7659511	0.84[MKK][hapmap]
rs7672525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7696315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173493200-173493600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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