Variant report

Variant	rs6823288
Chromosome Location	chr4:46358083-46358084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11930936	1.00[EUR][1000 genomes]
rs11931406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16859279	1.00[EUR][1000 genomes]
rs60164593	1.00[EUR][1000 genomes]
rs61621790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817334	1.00[EUR][1000 genomes]
rs6841617	1.00[EUR][1000 genomes]
rs6847406	1.00[EUR][1000 genomes]
rs73131372	1.00[EUR][1000 genomes]
rs73131375	1.00[EUR][1000 genomes]
rs73131382	1.00[EUR][1000 genomes]
rs73131383	1.00[EUR][1000 genomes]
rs73131384	1.00[EUR][1000 genomes]
rs73131388	1.00[EUR][1000 genomes]
rs73131396	1.00[EUR][1000 genomes]
rs73812846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656097	1.00[EUR][1000 genomes]
rs7669344	1.00[EUR][1000 genomes]
rs7697639	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007038	chr4:46343910-46413230	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46356400-46386000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:46357800-46365200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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