Variant report

Variant	rs6823424
Chromosome Location	chr4:96056140-96056141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10017056	0.85[EUR][1000 genomes]
rs13103406	0.81[EUR][1000 genomes]
rs13111378	0.81[EUR][1000 genomes]
rs13127255	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13131684	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13139927	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13146146	0.82[EUR][1000 genomes]
rs1434545	0.85[EUR][1000 genomes]
rs17411701	0.81[EUR][1000 genomes]
rs17411860	0.82[EUR][1000 genomes]
rs28601734	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34484245	0.81[EUR][1000 genomes]
rs34745188	0.82[EUR][1000 genomes]
rs34800104	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35888953	0.81[EUR][1000 genomes]
rs35966830	0.81[EUR][1000 genomes]
rs4145994	0.81[EUR][1000 genomes]
rs4699831	0.82[EUR][1000 genomes]
rs55888287	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62316255	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815593	0.81[EUR][1000 genomes]
rs6815752	0.81[EUR][1000 genomes]
rs6836821	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6838546	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6854585	0.81[EUR][1000 genomes]
rs6855319	0.80[EUR][1000 genomes]
rs7669755	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7682651	0.85[EUR][1000 genomes]
rs7690400	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7699056	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96016000-96060600	Weak transcription	Thymus	Thymus
2	chr4:96024200-96060600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:96026400-96057000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:96034200-96079200	Weak transcription	Fetal Kidney	kidney
5	chr4:96034800-96060600	Weak transcription	Ovary	ovary
6	chr4:96047400-96060600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:96051400-96075800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:96053000-96061600	Weak transcription	Fetal Thymus	thymus
9	chr4:96054200-96084000	Weak transcription	A549	lung
10	chr4:96054800-96060400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:96055400-96060600	Weak transcription	Dnd41	blood
12	chr4:96055400-96069800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:96055600-96057000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:96055600-96059800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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