Variant report

Variant	rs7669755
Chromosome Location	chr4:95989940-95989941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95988285..95990355-chr4:96023182..96024954,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10017056	0.85[CHB][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103406	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13103870	0.88[EUR][1000 genomes]
rs13111378	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13117435	0.82[AMR][1000 genomes]
rs13118960	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13127255	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128282	0.90[EUR][1000 genomes]
rs13131684	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13139927	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13146146	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13152791	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1434545	0.85[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17344975	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17403454	0.86[EUR][1000 genomes]
rs17404327	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17411701	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17411860	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1836264	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28601734	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34484245	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34745188	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34755714	0.90[EUR][1000 genomes]
rs34800104	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35653658	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35697886	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35888953	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35966830	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4145994	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699831	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55888287	0.82[EUR][1000 genomes]
rs62316229	0.86[EUR][1000 genomes]
rs62316236	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62316238	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316240	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62316255	0.87[EUR][1000 genomes]
rs6815593	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6815752	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6823424	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6829326	0.86[EUR][1000 genomes]
rs6836821	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838546	0.85[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6854585	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6855319	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7377902	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7682651	0.85[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7690400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694043	0.89[EUR][1000 genomes]
rs7699056	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95983200-95995400	Weak transcription	Psoas Muscle	Psoas
2	chr4:95983400-95993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:95985600-95990400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95987000-95993000	Weak transcription	A549	lung
5	chr4:95987600-95991400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:95987600-95991600	Genic enhancers	Dnd41	blood
7	chr4:95988000-95990400	Weak transcription	Fetal Thymus	thymus
8	chr4:95988000-95992000	Weak transcription	Thymus	Thymus
9	chr4:95988200-95993800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:95988600-95990400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:95989400-95990200	Enhancers	HUVEC	blood vessel
12	chr4:95989400-95991400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:95989800-95991000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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