Variant report

Variant	rs6825621
Chromosome Location	chr4:166289818-166289819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166288632..166293225-chr4:166298602..166301459,5	MCF-7	breast:
2	chr4:166287211..166290907-chr4:166291276..166292929,3	K562	blood:
3	chr4:166284247..166286679-chr4:166288539..166290783,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10003002	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10049753	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11724658	0.83[ASN][1000 genomes]
rs11724745	0.83[ASN][1000 genomes]
rs11726669	0.83[ASN][1000 genomes]
rs11733533	0.82[ASN][1000 genomes]
rs11733588	0.82[ASN][1000 genomes]
rs11735751	0.83[ASN][1000 genomes]
rs11737858	0.89[ASN][1000 genomes]
rs12108592	0.83[ASN][1000 genomes]
rs12500336	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12641231	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123907	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13124086	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1370681	0.83[ASN][1000 genomes]
rs1370684	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1370685	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1438111	0.83[ASN][1000 genomes]
rs1438113	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1583645	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16999548	0.83[ASN][1000 genomes]
rs17046348	0.80[ASN][1000 genomes]
rs17046358	0.80[ASN][1000 genomes]
rs4691186	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55918500	0.80[ASN][1000 genomes]
rs59281346	0.82[ASN][1000 genomes]
rs59689502	0.83[ASN][1000 genomes]
rs61164214	0.82[ASN][1000 genomes]
rs6536911	0.83[ASN][1000 genomes]
rs6811525	0.83[ASN][1000 genomes]
rs6812711	0.83[ASN][1000 genomes]
rs6830257	0.83[ASN][1000 genomes]
rs6837095	0.83[ASN][1000 genomes]
rs6843932	0.82[ASN][1000 genomes]
rs6844443	0.83[ASN][1000 genomes]
rs6844574	0.82[ASN][1000 genomes]
rs6844706	0.82[ASN][1000 genomes]
rs6846413	0.83[ASN][1000 genomes]
rs73862316	0.83[ASN][1000 genomes]
rs7440260	0.80[ASN][1000 genomes]
rs7662293	0.80[ASN][1000 genomes]
rs7666557	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7699257	0.82[ASN][1000 genomes]
rs875485	0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:166285400-166290000	Enhancers	HepG2	liver
3	chr4:166286800-166299400	Weak transcription	HMEC	breast
4	chr4:166287200-166290200	Enhancers	Hela-S3	cervix
5	chr4:166287600-166296000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:166288600-166291000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:166289000-166290000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:166289200-166290000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:166289200-166290000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr4:166289200-166290000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:166289200-166290000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:166289200-166290000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:166289400-166290000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:166289400-166290000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:166289600-166290000	Enhancers	HUES64 Cell Line	embryonic stem cell

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