Variant report

Variant	rs682602
Chromosome Location	chr11:73707358-73707359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73691320..73695538-chr11:73704392..73710067,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1685355	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1685356	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1726745	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075577	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs588097	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590336	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs631551	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs635441	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647126	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs680307	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7926165	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9735789	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:73702000-73711800	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:73702600-73711800	Weak transcription	Spleen	Spleen
4	chr11:73702800-73708600	Weak transcription	K562	blood
5	chr11:73702800-73711400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:73703000-73710000	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:73704000-73709000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:73705200-73707400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:73705800-73707400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:73705800-73707400	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr11:73705800-73707400	Enhancers	Dnd41	blood
13	chr11:73705800-73708200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:73706000-73713800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:73706200-73707600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr11:73706200-73707600	Enhancers	Thymus	Thymus
17	chr11:73706400-73707400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr11:73706400-73708200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:73706400-73708800	Enhancers	Fetal Thymus	thymus
20	chr11:73706400-73711800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73706600-73707400	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr11:73706600-73707400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:73706600-73707600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr11:73706800-73707400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:73706800-73712000	Weak transcription	Fetal Lung	lung
26	chr11:73706800-73713600	Weak transcription	Liver	Liver
27	chr11:73706800-73713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:73707000-73707400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:73707000-73708000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:73707000-73708800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:73707000-73711200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:73707000-73714400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:73707200-73707400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr11:73707200-73707400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr11:73707200-73707600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr11:73707200-73707600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr11:73707200-73708400	Enhancers	GM12878-XiMat	blood
38	chr11:73707200-73708800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:73707200-73709200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:73707200-73709600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:73707200-73711000	Weak transcription	Fetal Brain Female	brain
42	chr11:73707200-73713600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:73707200-73714800	Weak transcription	Primary hematopoietic stem cells	blood

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