Variant report

Variant	rs7926165
Chromosome Location	chr11:73709733-73709734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73699151..73702599-chr11:73708799..73712495,4	K562	blood:
2	chr11:73709291..73711416-chr11:73716050..73718311,2	K562	blood:
3	chr11:73706794..73708763-chr11:73709013..73711211,2	K562	blood:
4	chr11:73691320..73695538-chr11:73704392..73710067,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256723	Chromatin interaction
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1685355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1685356	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1726744	0.87[JPT][hapmap]
rs1726745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1726746	0.91[JPT][hapmap]
rs1726764	0.91[JPT][hapmap]
rs1790398	0.87[JPT][hapmap]
rs1790399	0.87[JPT][hapmap]
rs1790404	0.86[JPT][hapmap]
rs2075577	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944036	0.87[JPT][hapmap]
rs588097	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590336	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591758	0.95[CHB][hapmap]
rs599277	0.91[CHB][hapmap]
rs605442	0.86[CHB][hapmap]
rs631551	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs635441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs647126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs653529	0.95[CHB][hapmap]
rs655717	0.86[CHB][hapmap]
rs659366	0.95[CHB][hapmap]
rs660339	0.91[CHB][hapmap]
rs673494	0.90[CHB][hapmap]
rs680307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682602	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826033	0.87[JPT][hapmap]
rs826039	0.87[JPT][hapmap]
rs826056	0.87[JPT][hapmap]
rs826061	0.87[JPT][hapmap]
rs826062	0.87[JPT][hapmap]
rs9735789	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:73702000-73711800	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:73702600-73711800	Weak transcription	Spleen	Spleen
4	chr11:73702800-73711400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:73703000-73710000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:73706000-73713800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:73706400-73711800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:73706800-73712000	Weak transcription	Fetal Lung	lung
10	chr11:73706800-73713600	Weak transcription	Liver	Liver
11	chr11:73706800-73713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:73707000-73711200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:73707000-73714400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:73707200-73711000	Weak transcription	Fetal Brain Female	brain
15	chr11:73707200-73713600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:73707200-73714800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:73707400-73711400	Enhancers	Primary T cells from cord blood	blood
18	chr11:73707400-73711400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:73707400-73711600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:73707400-73711800	Enhancers	Primary B cells from cord blood	blood
21	chr11:73707400-73711800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr11:73707400-73713200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr11:73707400-73719800	Weak transcription	Dnd41	blood
24	chr11:73707600-73709800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr11:73707600-73710000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:73707600-73711600	Enhancers	Primary T cells fromperipheralblood	blood
27	chr11:73707600-73711600	Weak transcription	Thymus	Thymus
28	chr11:73707600-73711800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr11:73708000-73717600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:73708200-73710200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:73708200-73710800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:73708200-73711400	Weak transcription	Right Ventricle	heart
33	chr11:73708200-73713600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:73708600-73710800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:73708600-73711800	Weak transcription	Lung	lung
36	chr11:73708600-73712200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:73708600-73714800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:73708800-73710000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:73708800-73710600	Weak transcription	Fetal Thymus	thymus
40	chr11:73708800-73711000	Weak transcription	Fetal Stomach	stomach
41	chr11:73708800-73711200	Enhancers	GM12878-XiMat	blood
42	chr11:73708800-73711800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:73708800-73712200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:73708800-73713400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:73708800-73714400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:73708800-73729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:73709000-73711400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:73709000-73711800	Weak transcription	Placenta	Placenta
49	chr11:73709000-73713200	Weak transcription	A549	lung
50	chr11:73709000-73714200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links