Variant report

Variant	rs826033
Chromosome Location	chr11:73778943-73778944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73691754..73696567-chr11:73778152..73784121,11	MCF-7	breast:
2	chr11:73679005..73682645-chr11:73778281..73782136,5	MCF-7	breast:
3	chr11:73778180..73781840-chr11:73797440..73801034,4	MCF-7	breast:
4	chr11:73679561..73684546-chr11:73778723..73783416,5	MCF-7	breast:
5	chr11:73765763..73768156-chr11:73777620..73779561,2	MCF-7	breast:
6	chr11:73747729..73749562-chr11:73778913..73781744,2	MCF-7	breast:
7	chr11:73714167..73717044-chr11:73777878..73780816,2	MCF-7	breast:
8	chr11:73691101..73695528-chr11:73777647..73786599,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction
ENSG00000255847	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10898954	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1614299	0.90[ASN][1000 genomes]
rs1615115	0.90[ASN][1000 genomes]
rs1685326	0.83[ASN][1000 genomes]
rs1685355	0.87[JPT][hapmap]
rs1726735	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1726744	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1726745	0.87[JPT][hapmap]
rs1726746	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1726752	0.89[ASN][1000 genomes]
rs1726764	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs1783537	0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1790381	0.89[ASN][1000 genomes]
rs1790398	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1790399	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1790404	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2007567	0.87[ASN][1000 genomes]
rs2075577	0.87[JPT][hapmap]
rs4453265	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs474835	0.82[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4944036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4944038	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944878	0.94[ASN][1000 genomes]
rs500608	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs588097	0.87[JPT][hapmap]
rs590336	0.87[JPT][hapmap]
rs635441	0.87[JPT][hapmap]
rs647126	0.87[JPT][hapmap]
rs6592545	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7121868	0.92[ASN][1000 genomes]
rs7483884	0.92[ASN][1000 genomes]
rs7926165	0.87[JPT][hapmap]
rs826039	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826056	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826062	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826066	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs826033	P4HA3	cis	Thyroid	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:73750800-73800400	Weak transcription	HMEC	breast
4	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
7	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
8	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
11	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
12	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73758400-73782800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:73758800-73779400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:73759000-73783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:73759200-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:73759400-73780600	Weak transcription	Brain Germinal Matrix	brain
19	chr11:73759400-73781400	Weak transcription	Spleen	Spleen
20	chr11:73759400-73783600	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:73760000-73780200	Weak transcription	Fetal Intestine Large	intestine
22	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:73760200-73780600	Weak transcription	Hela-S3	cervix
24	chr11:73760600-73783200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:73760600-73785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:73760800-73779400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:73760800-73780600	Weak transcription	Right Ventricle	heart
28	chr11:73760800-73781200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:73760800-73782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:73761000-73779200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:73761000-73779400	Weak transcription	Gastric	stomach
32	chr11:73761000-73781600	Weak transcription	Brain Anterior Caudate	brain
33	chr11:73762000-73780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:73764000-73781400	Weak transcription	Brain Angular Gyrus	brain
35	chr11:73765000-73779400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:73765000-73780000	Weak transcription	Adipose Nuclei	Adipose
37	chr11:73765000-73781400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:73765000-73781800	Weak transcription	Brain Substantia Nigra	brain
39	chr11:73765400-73784000	Weak transcription	Fetal Intestine Small	intestine
40	chr11:73765600-73781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:73766800-73779200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:73767200-73781200	Weak transcription	Liver	Liver
43	chr11:73767600-73779000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:73767600-73781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:73767600-73783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:73767800-73779400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:73768000-73783200	Weak transcription	GM12878-XiMat	blood
48	chr11:73768200-73779000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:73768200-73779000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:73768200-73781800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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