Variant report

Variant	rs1726764
Chromosome Location	chr11:73731664-73731665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73726799..73729660-chr11:73730296..73732762,2	MCF-7	breast:
2	chr11:73721505..73724045-chr11:73730845..73732782,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10898954	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1615115	0.80[ASN][1000 genomes]
rs1685326	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1685355	0.91[JPT][hapmap]
rs1726735	0.83[ASN][1000 genomes]
rs1726744	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs1726745	0.91[JPT][hapmap]
rs1726746	0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs1790398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1790399	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1790404	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs2007567	0.87[ASN][1000 genomes]
rs2075577	0.91[JPT][hapmap]
rs4453265	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap]
rs4944036	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.82[ASN][1000 genomes]
rs4944038	0.83[ASN][1000 genomes]
rs588097	0.91[JPT][hapmap]
rs590336	0.91[JPT][hapmap]
rs635441	0.91[JPT][hapmap]
rs647126	0.91[JPT][hapmap]
rs6592545	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap]
rs7926165	0.91[JPT][hapmap]
rs826033	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs826039	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs826056	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs826061	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs826062	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725200-73736400	Weak transcription	NHEK	skin
12	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:73727200-73732200	Enhancers	Stomach Mucosa	stomach
14	chr11:73727400-73731800	Enhancers	Right Atrium	heart
15	chr11:73728000-73732200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
17	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:73728200-73731800	Enhancers	Right Ventricle	heart
19	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:73728600-73731800	Enhancers	Psoas Muscle	Psoas
21	chr11:73728600-73738600	Weak transcription	Dnd41	blood
22	chr11:73728800-73731800	Enhancers	Left Ventricle	heart
23	chr11:73728800-73732000	Enhancers	Small Intestine	intestine
24	chr11:73728800-73734600	Genic enhancers	Placenta	Placenta
25	chr11:73728800-73736800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:73729000-73731800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:73729000-73731800	Genic enhancers	Fetal Intestine Small	intestine
28	chr11:73729000-73731800	Enhancers	Spleen	Spleen
29	chr11:73729000-73732600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr11:73729000-73732800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:73729000-73733200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:73729200-73732200	Genic enhancers	Fetal Thymus	thymus
34	chr11:73729200-73732600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr11:73729200-73732600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:73729200-73732800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:73729200-73736600	Weak transcription	A549	lung
38	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
39	chr11:73729400-73731800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:73729400-73732200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:73729400-73732200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr11:73729400-73732600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr11:73729400-73732600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:73729400-73732600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:73729600-73732600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr11:73729800-73731800	Enhancers	HMEC	breast
47	chr11:73729800-73732000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr11:73729800-73732200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr11:73729800-73732800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:73729800-73733800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links