Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:73693885..73696124-chr11:73700512..73702993,3	MCF-7	breast:
2	chr11:73696417..73697930-chr11:73701051..73702763,2	MCF-7	breast:
3	chr11:73699151..73702599-chr11:73708799..73712495,4	K562	blood:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1685355	0.90[CHB][hapmap]
rs1726745	0.91[CHB][hapmap]
rs2075577	0.86[CHB][hapmap]
rs3019463	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34408426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs586773	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs588097	0.91[CHB][hapmap]
rs590336	0.81[CHB][hapmap]
rs591758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs599277	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs603950	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs605442	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs621976	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs632862	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs635441	0.91[CHB][hapmap]
rs647126	0.91[CHB][hapmap]
rs655717	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs659366	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs660339	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs673494	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs675547	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7926165	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs653529	C2CD3	cis	brain	BrainEAC
rs653529	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73702400	Weak transcription	Right Atrium	heart
2	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73696000-73702200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:73697000-73702400	Weak transcription	K562	blood
5	chr11:73699600-73702400	Weak transcription	Spleen	Spleen
6	chr11:73701000-73706000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:73701400-73706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr11:73701600-73705800	Enhancers	Primary T cells from cord blood	blood
9	chr11:73701600-73706000	Enhancers	Primary B cells from cord blood	blood
10	chr11:73701600-73706200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:73701600-73706200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr11:73701800-73702400	Enhancers	GM12878-XiMat	blood
13	chr11:73701800-73702600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:73701800-73702600	Enhancers	Fetal Thymus	thymus
15	chr11:73701800-73703000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:73701800-73705400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:73701800-73705800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:73702000-73702200	Enhancers	HepG2	liver
19	chr11:73702000-73711800	Enhancers	Primary B cells from peripheral blood	blood

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