Variant report

Variant	rs34408426
Chromosome Location	chr11:73697519-73697520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3019463	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586773	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599277	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs603950	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605442	0.82[ASN][1000 genomes]
rs621976	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs632862	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs653529	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs655717	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs659366	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs660339	0.93[ASN][1000 genomes]
rs673494	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs675547	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34408426	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73702400	Weak transcription	Right Atrium	heart
2	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73696000-73697600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:73696000-73699200	Weak transcription	HepG2	liver
5	chr11:73696000-73701000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:73696000-73701400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:73696000-73701600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:73696000-73701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:73696000-73701800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:73696000-73701800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:73696000-73702200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:73696200-73697800	Weak transcription	Primary B cells from cord blood	blood
13	chr11:73696800-73697800	Weak transcription	GM12878-XiMat	blood
14	chr11:73696800-73701600	Weak transcription	Primary T cells from cord blood	blood
15	chr11:73697000-73702400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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