Variant report

Variant	rs675547
Chromosome Location	chr11:73700410-73700411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000255847	Chromatin interaction
ENSG00000168014	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000187726	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3019463	0.99[ASN][1000 genomes]
rs34408426	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs586773	0.99[ASN][1000 genomes]
rs591758	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs599277	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs603950	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs605442	0.81[ASN][1000 genomes]
rs621976	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs632862	0.91[ASN][1000 genomes]
rs653529	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs655717	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659366	0.95[ASN][1000 genomes]
rs660339	0.92[ASN][1000 genomes]
rs673494	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs675547	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73702400	Weak transcription	Right Atrium	heart
2	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73696000-73701000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:73696000-73701400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:73696000-73701600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:73696000-73701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:73696000-73701800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:73696000-73701800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:73696000-73702200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:73696800-73701600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:73697000-73702400	Weak transcription	K562	blood
12	chr11:73698200-73701800	Weak transcription	GM12878-XiMat	blood
13	chr11:73698400-73701600	Weak transcription	Primary B cells from cord blood	blood
14	chr11:73699600-73702400	Weak transcription	Spleen	Spleen
15	chr11:73700400-73702000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:73700400-73702000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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