Variant report

Variant	rs6827039
Chromosome Location	chr4:60315125-60315126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035014	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1018263	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018264	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018265	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1355447	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397812	0.89[EUR][1000 genomes]
rs1397814	0.89[EUR][1000 genomes]
rs17089656	0.89[EUR][1000 genomes]
rs1858315	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28718811	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4241647	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398549	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4452458	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4496608	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4565106	0.96[EUR][1000 genomes]
rs4860569	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4860570	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62305738	0.81[ASN][1000 genomes]
rs62305739	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62305757	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6551808	0.96[EUR][1000 genomes]
rs6811854	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818585	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6820858	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6827654	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7441752	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7665683	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668945	0.92[EUR][1000 genomes]
rs7675909	0.96[EUR][1000 genomes]
rs7676141	0.97[EUR][1000 genomes]
rs7676524	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7682453	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7687441	0.94[EUR][1000 genomes]
rs7687653	0.93[EUR][1000 genomes]
rs7698051	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009160	chr4:60269677-60320021	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1833145	chr4:60293703-60330880	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1008558	chr4:60304331-60340770	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879050	chr4:60306500-60414423	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60315000-60315600	Enhancers	HUES48 Cell Line	embryonic stem cell

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