Variant report

Variant	rs4398549
Chromosome Location	chr4:60291462-60291463
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10035014	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1018263	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1018264	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1018265	0.91[EUR][1000 genomes]
rs1355447	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397812	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1397814	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17089656	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858315	0.91[EUR][1000 genomes]
rs4241647	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4452458	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4496608	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4565106	0.91[EUR][1000 genomes]
rs4860569	0.91[EUR][1000 genomes]
rs4860570	0.91[EUR][1000 genomes]
rs62305738	0.91[ASN][1000 genomes]
rs62305739	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62305757	0.91[EUR][1000 genomes]
rs6551808	0.91[EUR][1000 genomes]
rs6811854	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818585	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6820858	0.91[EUR][1000 genomes]
rs6827039	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6827654	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7441752	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7665683	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7668945	0.87[EUR][1000 genomes]
rs7674272	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7675909	0.91[EUR][1000 genomes]
rs7676141	0.88[EUR][1000 genomes]
rs7676524	0.87[EUR][1000 genomes]
rs7682453	0.90[EUR][1000 genomes]
rs7687441	0.88[EUR][1000 genomes]
rs7687653	0.86[EUR][1000 genomes]
rs7698051	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9996131	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1006397	chr4:60263029-60311162	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1009160	chr4:60269677-60320021	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3467128	chr4:60288580-60296450	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3467129	chr4:60288774-60296363	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv14505	chr4:60288872-60294403	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv594233	chr4:60290710-60294124	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv822565	chr4:60291322-60292500	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60286200-60293000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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