Variant report
| Variant | rs7674272 |
|---|---|
| Chromosome Location | chr4:60291205-60291206 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10035014 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1018263 | 0.81[EUR][1000 genomes] |
| rs1018264 | 0.80[EUR][1000 genomes] |
| rs1018265 | 0.81[EUR][1000 genomes] |
| rs1397812 | 0.82[EUR][1000 genomes] |
| rs1397814 | 0.82[EUR][1000 genomes] |
| rs17089656 | 0.82[EUR][1000 genomes] |
| rs1858315 | 0.81[EUR][1000 genomes] |
| rs4398549 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4452458 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4496608 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4565106 | 0.81[EUR][1000 genomes] |
| rs4860569 | 0.81[EUR][1000 genomes] |
| rs4860570 | 0.81[EUR][1000 genomes] |
| rs62305738 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62305739 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62305757 | 0.81[EUR][1000 genomes] |
| rs6551808 | 0.81[EUR][1000 genomes] |
| rs6811854 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6818585 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6820858 | 0.81[EUR][1000 genomes] |
| rs6827654 | 0.81[EUR][1000 genomes] |
| rs7441752 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7675909 | 0.81[EUR][1000 genomes] |
| rs7682453 | 0.81[EUR][1000 genomes] |
| rs7698051 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9996131 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879048 | chr4:60053789-60512343 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006397 | chr4:60263029-60311162 | Active TSS Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1009160 | chr4:60269677-60320021 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3467128 | chr4:60288580-60296450 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3467129 | chr4:60288774-60296363 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 6 | esv14505 | chr4:60288872-60294403 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv594233 | chr4:60290710-60294124 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:60286200-60293000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
