Variant report

Variant	rs6827875
Chromosome Location	chr4:171599020-171599021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10008580	0.85[EUR][1000 genomes]
rs10011002	0.85[EUR][1000 genomes]
rs10012201	0.88[ASN][1000 genomes]
rs10016504	0.84[EUR][1000 genomes]
rs10018573	0.84[EUR][1000 genomes]
rs10018673	0.94[ASN][1000 genomes]
rs10030592	0.83[EUR][1000 genomes]
rs13119766	0.84[EUR][1000 genomes]
rs13147483	0.84[EUR][1000 genomes]
rs1442909	0.90[ASN][1000 genomes]
rs1442911	0.84[EUR][1000 genomes]
rs17055995	0.84[EUR][1000 genomes]
rs2331976	0.91[ASN][1000 genomes]
rs28413006	0.84[EUR][1000 genomes]
rs28594344	0.84[EUR][1000 genomes]
rs34348601	0.84[EUR][1000 genomes]
rs34704211	0.83[EUR][1000 genomes]
rs34764144	0.84[EUR][1000 genomes]
rs34877800	0.83[EUR][1000 genomes]
rs35199694	0.84[EUR][1000 genomes]
rs35838289	0.84[EUR][1000 genomes]
rs35978308	0.84[EUR][1000 genomes]
rs4123378	0.83[EUR][1000 genomes]
rs4339170	0.84[EUR][1000 genomes]
rs4362782	0.94[ASN][1000 genomes]
rs4368570	0.84[EUR][1000 genomes]
rs4487305	0.94[ASN][1000 genomes]
rs4591556	0.84[EUR][1000 genomes]
rs4593091	0.92[ASN][1000 genomes]
rs4593092	0.84[EUR][1000 genomes]
rs4607176	0.84[EUR][1000 genomes]
rs55654575	0.81[EUR][1000 genomes]
rs55947842	0.85[ASN][1000 genomes]
rs57901929	0.84[EUR][1000 genomes]
rs58376252	0.84[EUR][1000 genomes]
rs59988282	0.84[EUR][1000 genomes]
rs6553536	0.94[ASN][1000 genomes]
rs6553537	0.84[EUR][1000 genomes]
rs6828494	0.92[ASN][1000 genomes]
rs6828514	0.84[EUR][1000 genomes]
rs6828724	0.84[EUR][1000 genomes]
rs6828756	0.92[ASN][1000 genomes]
rs6844817	0.91[ASN][1000 genomes]
rs6851126	0.80[EUR][1000 genomes]
rs6852477	0.80[EUR][1000 genomes]
rs6853295	0.84[EUR][1000 genomes]
rs6855350	0.81[EUR][1000 genomes]
rs6855380	0.84[EUR][1000 genomes]
rs6855386	0.84[EUR][1000 genomes]
rs71607810	0.84[EUR][1000 genomes]
rs71607811	0.83[EUR][1000 genomes]
rs71607812	0.84[EUR][1000 genomes]
rs73866043	0.84[EUR][1000 genomes]
rs73866044	0.84[EUR][1000 genomes]
rs73866045	0.84[EUR][1000 genomes]
rs73866069	0.84[EUR][1000 genomes]
rs73866098	0.84[EUR][1000 genomes]
rs7667249	0.84[EUR][1000 genomes]
rs7667290	0.84[EUR][1000 genomes]
rs7669074	0.83[EUR][1000 genomes]
rs7670495	0.83[EUR][1000 genomes]
rs7670523	0.83[EUR][1000 genomes]
rs7676680	0.84[EUR][1000 genomes]
rs7681130	0.92[ASN][1000 genomes]
rs7684621	0.94[ASN][1000 genomes]
rs7694510	0.83[EUR][1000 genomes]
rs9992998	0.93[ASN][1000 genomes]
rs9994841	0.84[EUR][1000 genomes]
rs9995101	0.86[ASN][1000 genomes]
rs9996819	0.85[EUR][1000 genomes]
rs9997039	0.83[EUR][1000 genomes]
rs9997272	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171593800-171602200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:171594000-171601400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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