Variant report

Variant	rs6830225
Chromosome Location	chr4:81224157-81224158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81212819..81214769-chr4:81222175..81224594,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10016207	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016626	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099145	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099173	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11099174	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1118550	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503208	0.93[ASN][1000 genomes]
rs12650677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13119149	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13123007	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13141004	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13144294	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1458032	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458034	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458035	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458040	0.90[ASN][1000 genomes]
rs2867709	0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2867734	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903658	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34584776	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690118	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4690151	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690152	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690153	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6813256	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6813303	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6830442	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837827	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856134	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856242	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs726896	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7658401	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664124	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7667119	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7687095	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7700242	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs968378	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81202200-81226200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:81210000-81225800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:81210400-81226200	Weak transcription	HSMM	muscle
4	chr4:81211400-81226200	Weak transcription	NH-A	brain
5	chr4:81217600-81226200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:81217600-81226400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:81218000-81225600	Weak transcription	NHLF	lung
8	chr4:81222000-81229400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:81223800-81224400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:81223800-81224400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:81223800-81224400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:81223800-81224800	Weak transcription	NHDF-Ad	bronchial
13	chr4:81223800-81225000	Weak transcription	Osteobl	bone
14	chr4:81224000-81224200	ZNF genes & repeats	Aorta	Aorta

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