Variant report

Variant	rs7700242
Chromosome Location	chr4:81228633-81228634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81227443..81229083-chr4:81231067..81232667,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10016207	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10016626	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099145	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11099173	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099174	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1118550	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12503208	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12650677	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13119149	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13123007	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13141004	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13144294	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1458032	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458034	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1458035	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458040	0.90[ASN][1000 genomes]
rs1841013	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2867709	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867734	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2903658	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34584776	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4690118	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690150	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4690151	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690152	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4690153	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6813256	0.95[ASN][1000 genomes]
rs6813303	0.95[ASN][1000 genomes]
rs6820889	0.89[EUR][1000 genomes]
rs6830225	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6830442	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6837827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856134	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856242	0.95[ASN][1000 genomes]
rs726896	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658401	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7664124	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667119	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687095	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs968378	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81222000-81229400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:81224400-81230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:81224800-81232200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:81225000-81229600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:81226200-81228800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:81226200-81229000	Enhancers	HSMM	muscle
7	chr4:81226200-81231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:81226200-81231400	Enhancers	NHLF	lung
9	chr4:81226400-81228800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:81226400-81228800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:81226400-81228800	Enhancers	HMEC	breast
12	chr4:81226400-81230000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:81226800-81230400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:81227200-81228800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:81227200-81229400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:81227400-81230000	Enhancers	Fetal Heart	heart
17	chr4:81227400-81230200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:81227600-81230200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:81227600-81230600	Enhancers	NHDF-Ad	bronchial
20	chr4:81227800-81229000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:81227800-81229200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:81227800-81229400	Enhancers	Fetal Brain Female	brain
23	chr4:81227800-81230000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:81227800-81230000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:81227800-81231000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:81228000-81228800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:81228000-81230000	Enhancers	Rectal Smooth Muscle	rectum
28	chr4:81228200-81228800	Enhancers	NH-A	brain
29	chr4:81228200-81229800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:81228400-81228800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:81228400-81228800	Weak transcription	HUVEC	blood vessel
32	chr4:81228400-81228800	Enhancers	K562	blood
33	chr4:81228400-81229000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:81228400-81229000	Enhancers	Colon Smooth Muscle	Colon
35	chr4:81228400-81229200	Enhancers	Fetal Kidney	kidney
36	chr4:81228400-81231000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:81228600-81229200	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr4:81228600-81229200	Enhancers	HSMMtube	muscle
39	chr4:81228600-81229400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr4:81228600-81229600	Enhancers	Fetal Stomach	stomach
41	chr4:81228600-81229800	Flanking Active TSS	Osteobl	bone
42	chr4:81228600-81230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr4:81228600-81230000	Flanking Active TSS	NHEK	skin

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