Variant report

Variant	rs6830484
Chromosome Location	chr4:16386956-16386957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489057	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721706	0.91[EUR][1000 genomes]
rs11722358	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722711	0.94[EUR][1000 genomes]
rs11735255	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736850	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945394	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472572	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893218	0.89[EUR][1000 genomes]
rs16893239	0.92[EUR][1000 genomes]
rs16893257	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893316	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893388	0.94[EUR][1000 genomes]
rs16893404	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860821	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041540	0.93[EUR][1000 genomes]
rs2072437	0.93[EUR][1000 genomes]
rs28566142	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28650994	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28659920	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940	0.93[EUR][1000 genomes]
rs41447446	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57653099	0.94[EUR][1000 genomes]
rs57773089	0.94[EUR][1000 genomes]
rs59486353	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59502099	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60788991	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449231	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67922017	0.95[EUR][1000 genomes]
rs6815561	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830697	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844412	0.92[EUR][1000 genomes]
rs6846948	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73118069	0.91[EUR][1000 genomes]
rs73118071	0.91[EUR][1000 genomes]
rs73121857	0.93[EUR][1000 genomes]
rs73127513	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127519	0.94[EUR][1000 genomes]
rs73127521	0.94[EUR][1000 genomes]
rs73127531	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127547	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73127555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73798733	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656955	0.85[EUR][1000 genomes]
rs7660573	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673330	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687874	0.84[EUR][1000 genomes]
rs7689789	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518102	chr4:16386449-16410294	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16385600-16388000	Enhancers	Fetal Muscle Leg	muscle

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