Variant report

Variant	rs6831498
Chromosome Location	chr4:125802654-125802655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125633390..125635842-chr4:125801059..125802872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10004729	0.84[ASN][1000 genomes]
rs10004734	0.84[ASN][1000 genomes]
rs10030199	0.84[ASN][1000 genomes]
rs1032930	0.83[ASN][1000 genomes]
rs1105992	0.83[ASN][1000 genomes]
rs12374334	0.99[ASN][1000 genomes]
rs12506706	0.81[ASN][1000 genomes]
rs12650300	0.84[ASN][1000 genomes]
rs1395325	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1395327	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1395328	0.82[ASN][1000 genomes]
rs1483607	0.88[ASN][1000 genomes]
rs1483611	0.81[ASN][1000 genomes]
rs1506552	0.84[EUR][1000 genomes]
rs16997819	0.84[ASN][1000 genomes]
rs17008768	0.82[ASN][1000 genomes]
rs1843000	0.89[ASN][1000 genomes]
rs1995628	0.84[ASN][1000 genomes]
rs2086765	0.84[ASN][1000 genomes]
rs2128845	0.83[ASN][1000 genomes]
rs2170745	0.83[ASN][1000 genomes]
rs2170748	0.83[ASN][1000 genomes]
rs28733838	0.82[ASN][1000 genomes]
rs34713532	0.83[ASN][1000 genomes]
rs4585320	0.83[ASN][1000 genomes]
rs4632674	0.82[ASN][1000 genomes]
rs4833309	0.83[ASN][1000 genomes]
rs4834007	0.83[ASN][1000 genomes]
rs56246326	0.83[ASN][1000 genomes]
rs62323305	0.94[ASN][1000 genomes]
rs67838067	0.83[ASN][1000 genomes]
rs6810487	0.80[ASN][1000 genomes]
rs6814405	0.83[ASN][1000 genomes]
rs6826258	0.84[ASN][1000 genomes]
rs6843995	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6857049	0.83[ASN][1000 genomes]
rs6857658	0.83[ASN][1000 genomes]
rs72683882	0.80[ASN][1000 genomes]
rs72685850	0.80[ASN][1000 genomes]
rs7672680	0.81[ASN][1000 genomes]
rs7677690	0.84[ASN][1000 genomes]
rs7677713	0.84[ASN][1000 genomes]
rs7680118	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs951529	0.83[ASN][1000 genomes]
rs951530	0.82[ASN][1000 genomes]
rs9637630	0.82[ASN][1000 genomes]
rs9654205	0.84[ASN][1000 genomes]
rs976412	0.81[ASN][1000 genomes]
rs976539	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125802400-125802800	Enhancers	Fetal Lung	lung

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