Variant report
| Variant | rs1395327 |
|---|---|
| Chromosome Location | chr4:125804337-125804338 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10010676 | 0.86[EUR][1000 genomes] |
| rs10024371 | 0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10034686 | 0.92[EUR][1000 genomes] |
| rs10222899 | 0.86[EUR][1000 genomes] |
| rs12374334 | 0.83[ASN][1000 genomes] |
| rs13125625 | 0.84[EUR][1000 genomes] |
| rs1395325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1395326 | 0.95[ASN][1000 genomes] |
| rs1483597 | 0.86[EUR][1000 genomes] |
| rs2046349 | 0.82[AFR][1000 genomes] |
| rs4518263 | 0.86[EUR][1000 genomes] |
| rs4833309 | 0.81[CHB][hapmap] |
| rs6534452 | 0.86[EUR][1000 genomes] |
| rs6831498 | 0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6843995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6857392 | 0.86[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7656360 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7680118 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9990572 | 0.80[ASN][1000 genomes] |
| rs9993168 | 0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879884 | chr4:125791252-125841892 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879885 | chr4:125791252-125852874 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv879886 | chr4:125791252-125856465 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1395327 | TRPC3 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125798200-125820800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
