Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125779700..125781513-chr4:125782014..125784982,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10010676	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10012927	0.82[ASN][1000 genomes]
rs10034686	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10222899	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944773	0.90[ASN][1000 genomes]
rs13125625	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354741	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1395325	0.86[EUR][1000 genomes]
rs1395327	0.86[EUR][1000 genomes]
rs1506547	0.82[JPT][hapmap]
rs2390739	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2390740	0.82[ASW][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28855823	0.82[ASN][1000 genomes]
rs35904122	0.82[ASN][1000 genomes]
rs4518263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834395	0.97[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6843995	0.86[EUR][1000 genomes]
rs6856783	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7680118	0.86[EUR][1000 genomes]
rs9993381	0.82[ASN][1000 genomes]
rs9996242	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125776800-125783800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125779000-125783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:125781600-125785400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:125782000-125782800	Enhancers	Ovary	ovary
5	chr4:125782200-125782600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:125782400-125784200	Enhancers	NHDF-Ad	bronchial
7	chr4:125782400-125786200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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