Variant report
| Variant | rs35904122 |
|---|---|
| Chromosome Location | chr4:125798889-125798890 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10010676 | 0.84[ASN][1000 genomes] |
| rs10012927 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10034686 | 0.96[ASN][1000 genomes] |
| rs10222899 | 0.84[ASN][1000 genomes] |
| rs13125625 | 0.82[ASN][1000 genomes] |
| rs1351748 | 0.80[ASN][1000 genomes] |
| rs1354741 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1395326 | 0.90[EUR][1000 genomes] |
| rs1483597 | 0.82[ASN][1000 genomes] |
| rs1506545 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1506547 | 0.80[ASN][1000 genomes] |
| rs2390739 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2390740 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4518263 | 0.84[ASN][1000 genomes] |
| rs6534452 | 0.84[ASN][1000 genomes] |
| rs6834395 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6856783 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7679784 | 0.80[ASN][1000 genomes] |
| rs9993381 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9996242 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879884 | chr4:125791252-125841892 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879885 | chr4:125791252-125852874 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv879886 | chr4:125791252-125856465 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125798200-125820800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
