Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10010676	0.84[ASN][1000 genomes]
rs10012927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034686	0.96[ASN][1000 genomes]
rs10222899	0.84[ASN][1000 genomes]
rs13125625	0.82[ASN][1000 genomes]
rs13149362	0.80[AFR][1000 genomes]
rs1351748	0.80[ASN][1000 genomes]
rs1354741	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1395326	0.94[EUR][1000 genomes]
rs1483597	0.82[ASN][1000 genomes]
rs1506545	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1506547	0.80[ASN][1000 genomes]
rs2390739	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2390740	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35904122	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518263	0.84[ASN][1000 genomes]
rs6534452	0.84[ASN][1000 genomes]
rs6834395	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6856783	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71610105	0.80[AFR][1000 genomes]
rs7679784	0.80[ASN][1000 genomes]
rs9996242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125796200-125797800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:125796600-125797600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:125796600-125797800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:125796600-125797800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:125796800-125797800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:125796800-125798200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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