Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:125782896..125785311-chr4:125806709..125809197,2	MCF-7	breast:
2	chr4:125633361..125635596-chr4:125782730..125785724,2	MCF-7	breast:
3	chr4:125779700..125781513-chr4:125782014..125784982,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10010676	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012927	0.84[ASN][1000 genomes]
rs10034686	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11944773	0.93[ASN][1000 genomes]
rs13125625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1354741	0.96[ASN][1000 genomes]
rs1395325	0.86[EUR][1000 genomes]
rs1395327	0.86[EUR][1000 genomes]
rs1483597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2390739	0.91[ASN][1000 genomes]
rs2390740	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28855823	0.84[ASN][1000 genomes]
rs35904122	0.84[ASN][1000 genomes]
rs4518263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834395	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6843995	0.86[EUR][1000 genomes]
rs6856783	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7680118	0.86[EUR][1000 genomes]
rs9993381	0.84[ASN][1000 genomes]
rs9996242	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125776800-125783800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125781600-125785400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:125782400-125784200	Enhancers	NHDF-Ad	bronchial
4	chr4:125782400-125786200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:125782800-125784000	Weak transcription	Ovary	ovary
6	chr4:125783000-125784400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:125783000-125784400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:125783200-125784400	Enhancers	Osteobl	bone
9	chr4:125783600-125783800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:125783600-125784000	Enhancers	HSMMtube	muscle
11	chr4:125783600-125784600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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