Variant report

Variant	rs11944773
Chromosome Location	chr4:125776030-125776031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10010676	0.93[ASN][1000 genomes]
rs10034686	0.81[ASN][1000 genomes]
rs10222899	0.93[ASN][1000 genomes]
rs10518453	0.97[EUR][1000 genomes]
rs1112007	0.93[EUR][1000 genomes]
rs13124562	0.94[EUR][1000 genomes]
rs13125625	0.90[ASN][1000 genomes]
rs1354741	0.89[ASN][1000 genomes]
rs1395330	0.91[EUR][1000 genomes]
rs1483597	0.90[ASN][1000 genomes]
rs17008677	0.97[EUR][1000 genomes]
rs2390739	0.84[ASN][1000 genomes]
rs2390740	0.89[ASN][1000 genomes]
rs28855823	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4518263	0.93[ASN][1000 genomes]
rs6534452	0.93[ASN][1000 genomes]
rs6834395	0.87[ASN][1000 genomes]
rs6856783	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125775800-125776200	Enhancers	NH-A	brain
2	chr4:125775800-125776800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:125775800-125776800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:125775800-125776800	Enhancers	GM12878-XiMat	blood
5	chr4:125775800-125777000	Enhancers	HSMM	muscle
6	chr4:125776000-125776200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:125776000-125776400	Flanking Active TSS	HSMMtube	muscle
8	chr4:125776000-125776600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:125776000-125776800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:125776000-125776800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:125776000-125776800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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