Variant report

Variant	rs7656360
Chromosome Location	chr4:125814946-125814947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004729	0.81[ASN][1000 genomes]
rs10004734	0.81[ASN][1000 genomes]
rs10024371	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10030199	0.81[ASN][1000 genomes]
rs11732371	0.94[EUR][1000 genomes]
rs12506187	0.94[EUR][1000 genomes]
rs12650300	0.81[ASN][1000 genomes]
rs1351748	0.94[EUR][1000 genomes]
rs1395325	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1395327	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1506547	0.96[EUR][1000 genomes]
rs16997819	0.80[ASN][1000 genomes]
rs1995626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1995628	0.80[ASN][1000 genomes]
rs6826258	0.81[ASN][1000 genomes]
rs6843995	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6857392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7677690	0.81[ASN][1000 genomes]
rs7677713	0.81[ASN][1000 genomes]
rs7679784	0.93[EUR][1000 genomes]
rs7680118	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9654205	0.80[ASN][1000 genomes]
rs9990572	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9993168	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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