Variant report

Variant	rs683170
Chromosome Location	chr15:46021264-46021265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11633148	0.86[ASN][1000 genomes]
rs12899530	0.86[ASN][1000 genomes]
rs12912809	0.86[ASN][1000 genomes]
rs1514003	0.84[AMR][1000 genomes]
rs4776236	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1041692	chr15:46017726-46048854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:46013600-46025200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:46016600-46025000	Weak transcription	Gastric	stomach
3	chr15:46020000-46021400	Enhancers	Fetal Brain Male	brain
4	chr15:46020800-46021400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:46020800-46022200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:46021000-46021400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:46021000-46021600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:46021000-46021600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:46021000-46021800	Enhancers	HMEC	breast
10	chr15:46021000-46022200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:46021000-46022200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:46021000-46022200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:46021000-46022400	Enhancers	NHEK	skin
14	chr15:46021200-46021800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr15:46021200-46024400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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