Variant report

Variant	rs6834438
Chromosome Location	chr4:6909135-6909136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:6909120-6909310	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr4:6909066-6909288	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6674347..6681155-chr4:6908104..6913611,9	K562	blood:
2	chr4:6909040..6912883-chr4:6987028..6993211,15	MCF-7	breast:
3	chr4:6908111..6910785-chr4:6941101..6945265,3	MCF-7	breast:
4	chr4:6723305..6725872-chr4:6907079..6909245,2	MCF-7	breast:
5	chr4:6710219..6713070-chr4:6909103..6911122,2	MCF-7	breast:
6	chr4:6907895..6910630-chr4:6913447..6916196,5	MCF-7	breast:
7	chr4:6908979..6910167-chr4:7072214..7073171,6	MCF-7	breast:
8	chr4:6908374..6913659-chr4:7068343..7071782,10	MCF-7	breast:

No data

Variant related genes	Relation type
TBC1D14	TF binding region
ENSG00000251580	Chromatin interaction
ENSG00000170846	Chromatin interaction
ENSG00000132405	Chromatin interaction
ENSG00000178988	Chromatin interaction
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13118486	0.87[ASN][1000 genomes]
rs13141777	0.87[ASN][1000 genomes]
rs28396694	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6896800-6909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:6898000-6909600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:6904000-6910400	Weak transcription	Right Atrium	heart
4	chr4:6904200-6909400	Weak transcription	Left Ventricle	heart
5	chr4:6904400-6909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:6904400-6909400	Weak transcription	Gastric	stomach
7	chr4:6906200-6909200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:6906200-6910400	Enhancers	Liver	Liver
9	chr4:6906400-6909400	Enhancers	HepG2	liver
10	chr4:6906600-6909200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:6906600-6909400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:6906600-6909400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:6906600-6909600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:6906600-6909600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:6906600-6909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:6906600-6910000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:6906800-6909200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:6906800-6909400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:6907400-6910600	Enhancers	Spleen	Spleen
20	chr4:6907600-6909400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:6907800-6910200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr4:6908000-6909200	Weak transcription	Brain Anterior Caudate	brain
23	chr4:6908000-6909400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:6908000-6910400	Weak transcription	Esophagus	oesophagus
25	chr4:6908200-6909400	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:6908200-6910000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:6908200-6910000	Weak transcription	Brain Angular Gyrus	brain
28	chr4:6908200-6910200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:6908400-6909600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:6908600-6909400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
31	chr4:6908800-6909200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr4:6908800-6910600	Enhancers	Pancreas	Pancrea
33	chr4:6909000-6909200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr4:6909000-6909200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
35	chr4:6909000-6909200	Bivalent Enhancer	Fetal Intestine Small	intestine
36	chr4:6909000-6909400	Weak transcription	Right Ventricle	heart
37	chr4:6909000-6909400	Bivalent Enhancer	Osteobl	bone
38	chr4:6909000-6909600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
39	chr4:6909000-6909800	Enhancers	Lung	lung
40	chr4:6909000-6909800	Enhancers	K562	blood
41	chr4:6909000-6910400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:6909000-6910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:6909000-6910400	Enhancers	Brain Germinal Matrix	brain
44	chr4:6909000-6910400	Enhancers	Placenta	Placenta
45	chr4:6909000-6910600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:6909000-6910600	Enhancers	Fetal Heart	heart

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