Variant report

Variant	rs13141777
Chromosome Location	chr4:6913571-6913572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6913495..6915954-chr4:7072774..7077001,4	K562	blood:
2	chr4:6909981..6913772-chr4:7044379..7047071,5	MCF-7	breast:
3	chr4:6842094..6843915-chr4:6911988..6914915,2	K562	blood:
4	chr4:6716082..6719440-chr4:6909577..6914212,9	MCF-7	breast:
5	chr4:6674347..6681155-chr4:6908104..6913611,9	K562	blood:
6	chr4:6913191..6915795-chr4:7078179..7080904,2	K562	blood:
7	chr4:6710075..6712844-chr4:6911946..6914714,3	K562	blood:
8	chr4:6781457..6785420-chr4:6909700..6913714,6	MCF-7	breast:
9	chr4:6782866..6788328-chr4:6910576..6915466,10	K562	blood:
10	chr4:6726504..6730102-chr4:6912147..6916497,3	K562	blood:
11	chr4:6908374..6913659-chr4:7068343..7071782,10	MCF-7	breast:
12	chr4:6912685..6914453-chr4:7047994..7050583,2	MCF-7	breast:
13	chr4:6907895..6910630-chr4:6913447..6916196,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178988	Chromatin interaction
ENSG00000186222	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000251580	Chromatin interaction
ENSG00000109519	Chromatin interaction
ENSG00000170846	Chromatin interaction
ENSG00000170871	Chromatin interaction
ENSG00000173013	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12512484	0.82[AMR][1000 genomes]
rs13118486	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149923	0.84[AMR][1000 genomes]
rs34379427	0.84[AMR][1000 genomes]
rs34463709	0.84[AMR][1000 genomes]
rs34860182	0.84[AMR][1000 genomes]
rs34953654	0.82[AMR][1000 genomes]
rs34959511	0.82[AMR][1000 genomes]
rs34990775	0.84[AMR][1000 genomes]
rs35680216	0.82[AMR][1000 genomes]
rs4689056	0.84[AMR][1000 genomes]
rs4689560	0.82[AMR][1000 genomes]
rs4689565	0.84[AMR][1000 genomes]
rs66530709	0.84[AMR][1000 genomes]
rs66841627	0.84[AMR][1000 genomes]
rs6834438	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6911800-6913600	Flanking Active TSS	Colonic Mucosa	Colon
2	chr4:6912000-6913600	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr4:6912000-6913600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr4:6912000-6913600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr4:6912000-6913600	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr4:6912200-6913600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:6912200-6913600	Flanking Active TSS	Liver	Liver
8	chr4:6912200-6913600	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr4:6912200-6913600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr4:6912200-6915200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr4:6912400-6913600	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr4:6912600-6913600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:6912600-6913600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:6912600-6913600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:6912600-6913600	Enhancers	Esophagus	oesophagus
16	chr4:6912600-6913600	Enhancers	Lung	lung
17	chr4:6912600-6913600	Enhancers	Right Ventricle	heart
18	chr4:6912600-6913600	Transcr. at gene 5' and 3'	K562	blood
19	chr4:6912600-6915000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:6912600-6915400	Enhancers	Primary B cells from peripheral blood	blood
21	chr4:6912600-6915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:6912600-6917200	Weak transcription	Small Intestine	intestine
23	chr4:6912600-6918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:6912600-6918000	Weak transcription	HUVEC	blood vessel
25	chr4:6912600-6920000	Weak transcription	HSMM	muscle
26	chr4:6912600-6925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:6912800-6913600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:6912800-6913600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr4:6912800-6913600	Enhancers	Psoas Muscle	Psoas
30	chr4:6912800-6913800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr4:6912800-6913800	Enhancers	Pancreas	Pancrea
32	chr4:6912800-6913800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr4:6912800-6914600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr4:6912800-6914800	Enhancers	Spleen	Spleen
35	chr4:6912800-6918000	Weak transcription	HMEC	breast
36	chr4:6912800-6918200	Weak transcription	NH-A	brain
37	chr4:6912800-6918200	Weak transcription	NHEK	skin
38	chr4:6913000-6913600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr4:6913000-6913600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:6913000-6913600	Flanking Active TSS	HepG2	liver
41	chr4:6913000-6914200	Weak transcription	Right Atrium	heart
42	chr4:6913000-6914600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:6913000-6914600	Enhancers	Brain Angular Gyrus	brain
44	chr4:6913000-6914600	Enhancers	Left Ventricle	heart
45	chr4:6913000-6915200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:6913000-6915400	Enhancers	Thymus	Thymus
47	chr4:6913000-6918200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:6913000-6918200	Weak transcription	Fetal Heart	heart
49	chr4:6913000-6918200	Weak transcription	A549	lung
50	chr4:6913000-6918400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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