Variant report

Variant	rs34860182
Chromosome Location	chr4:6925237-6925238
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6924422..6927283-chr4:6930396..6933115,3	K562	blood:
2	chr4:6917201..6921579-chr4:6924492..6930074,6	MCF-7	breast:
3	chr4:6909963..6912664-chr4:6925024..6930247,5	MCF-7	breast:
4	chr4:6925139..6926793-chr4:6927424..6929653,2	K562	blood:
5	chr4:6910406..6912852-chr4:6922580..6925355,2	MCF-7	breast:
6	chr4:6918829..6920609-chr4:6923833..6926676,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11938701	0.84[AMR][1000 genomes]
rs12503027	0.84[AMR][1000 genomes]
rs12512484	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108082	0.80[ASN][1000 genomes]
rs13111887	0.80[ASN][1000 genomes]
rs13115245	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13122119	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13141777	0.84[AMR][1000 genomes]
rs13144485	0.82[AMR][1000 genomes]
rs13148395	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13149411	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13149923	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2301818	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2301819	0.86[ASN][1000 genomes]
rs34221933	0.83[EUR][1000 genomes]
rs34335938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34379427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34481892	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34953654	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959511	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34990775	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35170004	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35680216	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3894945	0.84[AMR][1000 genomes]
rs4234788	0.80[ASN][1000 genomes]
rs4234791	0.86[ASN][1000 genomes]
rs4689056	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689560	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689563	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4689564	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4689565	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62289166	0.86[AMR][1000 genomes]
rs6446559	0.80[ASN][1000 genomes]
rs66530709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66640699	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66841627	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66931928	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66992702	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6811496	0.84[AMR][1000 genomes]
rs6816660	0.80[ASN][1000 genomes]
rs6818744	0.84[AMR][1000 genomes]
rs6840780	0.81[EUR][1000 genomes]
rs7655773	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3400936	chr4:6925101-6927799	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6912600-6925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:6918600-6925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:6918800-6925400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:6919000-6928000	Weak transcription	Fetal Kidney	kidney
5	chr4:6919200-6925400	Weak transcription	HSMMtube	muscle
6	chr4:6919600-6925600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:6919600-6942200	Weak transcription	Hela-S3	cervix
8	chr4:6920200-6925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:6920200-6927600	Weak transcription	Right Atrium	heart
10	chr4:6920200-6939600	Weak transcription	HUVEC	blood vessel
11	chr4:6920400-6925400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:6920400-6925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:6920400-6925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:6920400-6925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:6920400-6925400	Weak transcription	Pancreas	Pancrea
16	chr4:6920400-6925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:6920400-6928600	Weak transcription	Psoas Muscle	Psoas
18	chr4:6920400-6931000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:6921000-6925600	Weak transcription	Fetal Lung	lung
20	chr4:6921400-6925600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:6922000-6925400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:6922200-6925400	Weak transcription	Fetal Brain Female	brain
23	chr4:6922400-6925400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:6922400-6925400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:6922400-6925600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:6922400-6927400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:6922600-6925400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:6922600-6925400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:6923200-6930800	Weak transcription	Stomach Mucosa	stomach
30	chr4:6923600-6925400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:6923600-6925800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr4:6923800-6925400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr4:6923800-6925600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:6923800-6926000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr4:6923800-6926400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr4:6923800-6927000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:6923800-6927200	Strong transcription	Thymus	Thymus
38	chr4:6924000-6925400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:6924200-6925400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:6924200-6925400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:6924200-6927000	Strong transcription	Primary T cells from cord blood	blood
42	chr4:6924200-6927800	Strong transcription	Fetal Intestine Small	intestine
43	chr4:6924400-6927200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:6924400-6930600	Weak transcription	Fetal Brain Male	brain
45	chr4:6924600-6925600	Strong transcription	HepG2	liver
46	chr4:6924600-6926400	Strong transcription	Fetal Thymus	thymus
47	chr4:6924600-6927000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:6924600-6928600	Weak transcription	Osteobl	bone
49	chr4:6924600-6929000	Strong transcription	Fetal Stomach	stomach
50	chr4:6924800-6925400	Strong transcription	Spleen	Spleen

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