Variant report

Variant	rs4234791
Chromosome Location	chr4:6957297-6957298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6957151..6958977-chr4:6961301..6963114,2	K562	blood:
2	chr4:6956864..6959519-chr4:7054883..7056479,2	K562	blood:
3	chr4:6956864..6959792-chr4:7054490..7056479,3	K562	blood:
4	chr4:6910837..6912550-chr4:6955221..6957525,2	MCF-7	breast:
5	chr4:6956929..6959439-chr4:6986571..6988935,2	K562	blood:

Variant related genes	Relation type
ENSG00000173011	Chromatin interaction
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10012590	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10025310	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10937772	0.82[ASN][1000 genomes]
rs10937774	1.00[CHB][hapmap]
rs11732898	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11938701	0.93[ASN][1000 genomes]
rs11944897	0.93[ASN][1000 genomes]
rs12502513	1.00[CHB][hapmap]
rs12503027	0.93[ASN][1000 genomes]
rs12510715	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12511796	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12512484	0.86[ASN][1000 genomes]
rs13107989	0.93[ASN][1000 genomes]
rs13108082	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13111887	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13115245	0.86[ASN][1000 genomes]
rs13122119	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13144485	0.90[EUR][1000 genomes]
rs13148395	0.93[ASN][1000 genomes]
rs13149411	1.00[ASN][1000 genomes]
rs13149923	0.93[ASN][1000 genomes]
rs2301817	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2301818	0.86[ASN][1000 genomes]
rs2301819	0.86[ASN][1000 genomes]
rs3188939	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs34219101	0.80[ASN][1000 genomes]
rs34221933	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34335938	1.00[ASN][1000 genomes]
rs34379427	0.86[ASN][1000 genomes]
rs34463709	1.00[ASN][1000 genomes]
rs34481892	1.00[ASN][1000 genomes]
rs34860182	0.86[ASN][1000 genomes]
rs34953654	0.87[ASN][1000 genomes]
rs34959511	1.00[ASN][1000 genomes]
rs34990775	0.86[ASN][1000 genomes]
rs35170004	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35680216	0.93[ASN][1000 genomes]
rs3892490	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs3894945	0.93[ASN][1000 genomes]
rs4234788	0.93[ASN][1000 genomes]
rs4234793	0.93[ASN][1000 genomes]
rs4296677	0.82[ASN][1000 genomes]
rs4327487	0.88[YRI][hapmap]
rs4376137	0.90[YRI][hapmap]
rs4458452	0.82[ASN][1000 genomes]
rs4544710	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4645214	0.82[ASN][1000 genomes]
rs4689056	0.86[ASN][1000 genomes]
rs4689058	1.00[YRI][hapmap]
rs4689560	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4689563	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689564	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689565	1.00[ASN][1000 genomes]
rs4689566	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4689567	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4689568	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4689575	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4689579	0.86[ASN][1000 genomes]
rs55822670	0.80[ASN][1000 genomes]
rs62289166	0.93[ASN][1000 genomes]
rs6446554	1.00[YRI][hapmap]
rs6446559	0.80[ASN][1000 genomes]
rs66530709	1.00[ASN][1000 genomes]
rs66640699	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66841627	0.93[ASN][1000 genomes]
rs66931928	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66992702	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811496	0.93[ASN][1000 genomes]
rs6816660	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816882	0.80[ASN][1000 genomes]
rs6818744	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6831129	0.80[ASN][1000 genomes]
rs6834102	0.93[ASN][1000 genomes]
rs6840780	0.93[ASN][1000 genomes]
rs6854776	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7655563	1.00[CHB][hapmap]
rs7655773	1.00[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7658198	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7661462	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7661952	1.00[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7673901	0.93[ASN][1000 genomes]
rs7675524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7685667	0.93[ASN][1000 genomes]
rs7689324	0.90[YRI][hapmap]
rs9291126	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
3	chr4:6945800-6965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:6946600-6969000	Weak transcription	Dnd41	blood
5	chr4:6948600-6962400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:6950400-6963800	Weak transcription	Small Intestine	intestine
7	chr4:6953600-6960600	Enhancers	Fetal Thymus	thymus
8	chr4:6953800-6960000	Enhancers	Placenta	Placenta
9	chr4:6954000-6957600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:6954000-6964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:6954200-6957800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:6954200-6958000	Weak transcription	Thymus	Thymus
13	chr4:6954200-6958800	Weak transcription	Primary T cells from cord blood	blood
14	chr4:6954400-6957800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:6954400-6965800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:6954600-6957800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:6954600-6958000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:6954600-6958200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:6954600-6958200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:6954600-6958400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:6954600-6958400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:6954600-6958400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:6954800-6962800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:6955000-6962600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:6955200-6957800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr4:6955400-6957400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr4:6955400-6957400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:6955400-6957600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr4:6955400-6957600	Enhancers	Brain Hippocampus Middle	brain
30	chr4:6955400-6957600	Enhancers	Stomach Mucosa	stomach
31	chr4:6955400-6957800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr4:6955400-6958000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:6955400-6958400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:6955400-6958400	Enhancers	Fetal Intestine Large	intestine
35	chr4:6955400-6959000	Genic enhancers	Fetal Intestine Small	intestine
36	chr4:6955400-6959200	Enhancers	HepG2	liver
37	chr4:6955400-6960000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:6955600-6957600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:6955600-6957600	Enhancers	Placenta Amnion	Placenta Amnion
40	chr4:6955600-6958800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:6955600-6961800	Enhancers	Pancreas	Pancrea
42	chr4:6955800-6957600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:6955800-6957600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:6955800-6957800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:6955800-6958200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:6955800-6958600	Weak transcription	Liver	Liver
47	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:6956000-6957400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr4:6956000-6957400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:6956000-6957400	Enhancers	Brain Angular Gyrus	brain

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