Variant report

Variant	rs4689566
Chromosome Location	chr4:6947685-6947686
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6910492..6915918-chr4:6946437..6950272,7	K562	blood:
2	chr4:6918951..6920987-chr4:6946551..6948090,2	K562	blood:
3	chr4:6917668..6920987-chr4:6945472..6948090,3	K562	blood:
4	chr4:6927493..6929739-chr4:6946981..6949624,2	K562	blood:
5	chr4:6909142..6912159-chr4:6946034..6948699,3	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10012590	0.81[ASN][1000 genomes]
rs10025310	0.81[ASN][1000 genomes]
rs10937772	0.82[ASN][1000 genomes]
rs11938701	0.81[ASN][1000 genomes]
rs11944897	0.81[ASN][1000 genomes]
rs12503027	0.81[ASN][1000 genomes]
rs12510715	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511796	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13107989	0.81[ASN][1000 genomes]
rs13108082	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13111887	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13122119	0.87[ASN][1000 genomes]
rs13144485	0.89[EUR][1000 genomes]
rs13148395	0.81[ASN][1000 genomes]
rs13149411	0.87[ASN][1000 genomes]
rs13149923	0.81[ASN][1000 genomes]
rs2301817	0.81[ASN][1000 genomes]
rs3188939	0.81[ASN][1000 genomes]
rs34221933	0.81[ASN][1000 genomes]
rs34335938	0.87[ASN][1000 genomes]
rs34463709	0.87[ASN][1000 genomes]
rs34481892	0.87[ASN][1000 genomes]
rs34959511	0.87[ASN][1000 genomes]
rs35170004	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35680216	0.81[ASN][1000 genomes]
rs3894945	0.81[ASN][1000 genomes]
rs4234788	0.94[ASN][1000 genomes]
rs4234791	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4234793	0.81[ASN][1000 genomes]
rs4296677	0.82[ASN][1000 genomes]
rs4428285	0.89[ASN][1000 genomes]
rs4458452	0.82[ASN][1000 genomes]
rs4544710	0.81[ASN][1000 genomes]
rs4645214	0.82[ASN][1000 genomes]
rs4689059	0.89[ASN][1000 genomes]
rs4689060	0.89[ASN][1000 genomes]
rs4689563	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4689564	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4689565	0.87[ASN][1000 genomes]
rs4689567	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689575	0.81[ASN][1000 genomes]
rs62289166	0.81[ASN][1000 genomes]
rs66530709	0.87[ASN][1000 genomes]
rs66640699	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66841627	0.81[ASN][1000 genomes]
rs66931928	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66992702	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6811496	0.81[ASN][1000 genomes]
rs6816660	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6834102	0.81[ASN][1000 genomes]
rs6840780	0.81[ASN][1000 genomes]
rs6854776	0.81[ASN][1000 genomes]
rs7655773	0.81[ASN][1000 genomes]
rs7661952	0.81[ASN][1000 genomes]
rs7673901	0.81[ASN][1000 genomes]
rs7675524	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685667	0.81[ASN][1000 genomes]
rs9291126	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6939200-6948000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:6941800-6947800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:6942000-6948000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:6943800-6955400	Weak transcription	Brain Substantia Nigra	brain
6	chr4:6944400-6949800	Weak transcription	Fetal Lung	lung
7	chr4:6944600-6947800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:6944800-6955400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:6945000-6949000	Genic enhancers	Fetal Intestine Small	intestine
10	chr4:6945000-6949600	Weak transcription	Fetal Kidney	kidney
11	chr4:6945000-6955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
13	chr4:6945200-6955600	Weak transcription	Fetal Brain Female	brain
14	chr4:6945400-6953600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:6945400-6955400	Weak transcription	Fetal Stomach	stomach
16	chr4:6945600-6949800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:6945600-6952800	Weak transcription	Esophagus	oesophagus
18	chr4:6945600-6952800	Weak transcription	K562	blood
19	chr4:6945600-6953000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr4:6945600-6953600	Weak transcription	GM12878-XiMat	blood
21	chr4:6945600-6955600	Weak transcription	Left Ventricle	heart
22	chr4:6945800-6953600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:6945800-6965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:6946000-6949800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:6946000-6953000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:6946400-6955400	Weak transcription	NHLF	lung
27	chr4:6946600-6949000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:6946600-6949600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:6946600-6953000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:6946600-6955200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:6946600-6955400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:6946600-6955800	Weak transcription	Fetal Brain Male	brain
33	chr4:6946600-6969000	Weak transcription	Dnd41	blood
34	chr4:6946800-6947800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr4:6946800-6949400	Weak transcription	Lung	lung
36	chr4:6946800-6949600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:6946800-6949600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:6946800-6949600	Weak transcription	Liver	Liver
39	chr4:6946800-6949600	Weak transcription	Gastric	stomach
40	chr4:6946800-6949600	Weak transcription	Pancreas	Pancrea
41	chr4:6946800-6952600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:6946800-6953600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:6946800-6953600	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:6946800-6953600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:6946800-6954000	Weak transcription	Primary B cells from cord blood	blood
46	chr4:6946800-6955400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:6946800-6955400	Weak transcription	Stomach Mucosa	stomach
48	chr4:6946800-6955400	Weak transcription	NHDF-Ad	bronchial
49	chr4:6947000-6947800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr4:6947000-6947800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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