Variant report

Variant	rs66841627
Chromosome Location	chr4:6927011-6927012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6926884..6928623-chr4:6939746..6942582,2	MCF-7	breast:
2	chr4:6924422..6927283-chr4:6930396..6933115,3	K562	blood:
3	chr4:6917201..6921579-chr4:6924492..6930074,6	MCF-7	breast:
4	chr4:6909963..6912664-chr4:6925024..6930247,5	MCF-7	breast:
5	chr4:6926678..6929634-chr4:6988002..6989801,2	K562	blood:
6	chr4:6926678..6930436-chr4:6987384..6989801,3	K562	blood:
7	chr4:6922272..6924651-chr4:6925651..6927891,2	MCF-7	breast:
8	chr4:6863476..6866254-chr4:6925496..6927606,2	K562	blood:
9	chr4:6921707..6924021-chr4:6925903..6927996,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10012590	0.86[ASN][1000 genomes]
rs10025310	0.86[ASN][1000 genomes]
rs10516181	0.81[ASN][1000 genomes]
rs10937776	0.81[ASN][1000 genomes]
rs11732898	0.81[ASN][1000 genomes]
rs11938701	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11944897	0.86[ASN][1000 genomes]
rs12503027	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12510715	0.81[ASN][1000 genomes]
rs12512484	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13107989	0.86[ASN][1000 genomes]
rs13108082	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13111887	0.87[ASN][1000 genomes]
rs13115245	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13122119	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13141777	0.84[AMR][1000 genomes]
rs13144485	0.83[AMR][1000 genomes]
rs13148395	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13149411	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13149923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301817	0.86[ASN][1000 genomes]
rs2301818	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2301819	0.93[ASN][1000 genomes]
rs2359194	0.81[ASN][1000 genomes]
rs3188939	0.86[ASN][1000 genomes]
rs34221933	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34335938	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34379427	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34463709	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34481892	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34860182	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34953654	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34959511	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34990775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35170004	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35680216	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857171	0.81[ASN][1000 genomes]
rs3894945	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4234788	0.87[ASN][1000 genomes]
rs4234791	0.93[ASN][1000 genomes]
rs4234793	0.86[ASN][1000 genomes]
rs4544710	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4689056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4689560	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4689563	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4689564	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4689565	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4689566	0.81[ASN][1000 genomes]
rs4689567	0.81[ASN][1000 genomes]
rs4689568	0.81[ASN][1000 genomes]
rs4689575	0.86[ASN][1000 genomes]
rs4689579	0.80[ASN][1000 genomes]
rs62289166	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6446559	0.87[ASN][1000 genomes]
rs66530709	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66640699	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66931928	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66992702	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6811496	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6816660	0.87[ASN][1000 genomes]
rs6818744	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6834102	0.86[ASN][1000 genomes]
rs6840780	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6854776	0.86[ASN][1000 genomes]
rs7655773	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7661952	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7673901	0.86[ASN][1000 genomes]
rs7675524	0.81[ASN][1000 genomes]
rs7685667	0.86[ASN][1000 genomes]
rs7693321	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3400936	chr4:6925101-6927799	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6919000-6928000	Weak transcription	Fetal Kidney	kidney
2	chr4:6919600-6942200	Weak transcription	Hela-S3	cervix
3	chr4:6920200-6927600	Weak transcription	Right Atrium	heart
4	chr4:6920200-6939600	Weak transcription	HUVEC	blood vessel
5	chr4:6920400-6928600	Weak transcription	Psoas Muscle	Psoas
6	chr4:6920400-6931000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:6922400-6927400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:6923200-6930800	Weak transcription	Stomach Mucosa	stomach
9	chr4:6923800-6927200	Strong transcription	Thymus	Thymus
10	chr4:6924200-6927800	Strong transcription	Fetal Intestine Small	intestine
11	chr4:6924400-6927200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:6924400-6930600	Weak transcription	Fetal Brain Male	brain
13	chr4:6924600-6928600	Weak transcription	Osteobl	bone
14	chr4:6924600-6929000	Strong transcription	Fetal Stomach	stomach
15	chr4:6924800-6928000	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr4:6924800-6928200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:6924800-6928400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr4:6925000-6927200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:6925000-6927200	Strong transcription	GM12878-XiMat	blood
20	chr4:6925000-6927600	Genic enhancers	Brain Anterior Caudate	brain
21	chr4:6925000-6927600	Strong transcription	Colonic Mucosa	Colon
22	chr4:6925000-6928000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:6925000-6928000	Strong transcription	Dnd41	blood
24	chr4:6925000-6928800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:6925200-6927200	Strong transcription	Fetal Muscle Leg	muscle
26	chr4:6925200-6927400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:6925200-6927400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:6925200-6927400	Strong transcription	Brain Germinal Matrix	brain
29	chr4:6925200-6927400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr4:6925200-6927600	Strong transcription	Colon Smooth Muscle	Colon
31	chr4:6925200-6927600	Genic enhancers	Right Ventricle	heart
32	chr4:6925200-6927800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr4:6925200-6927800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:6925200-6927800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:6925200-6927800	Strong transcription	Gastric	stomach
36	chr4:6925200-6927800	Strong transcription	Lung	lung
37	chr4:6925200-6928000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:6925200-6928000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:6925200-6928000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:6925200-6928000	Strong transcription	Aorta	Aorta
41	chr4:6925200-6928000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:6925200-6928000	Strong transcription	Rectal Smooth Muscle	rectum
43	chr4:6925200-6928400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:6925400-6927200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr4:6925400-6927600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:6925400-6927600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:6925400-6927800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:6925400-6928000	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr4:6925400-6928200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:6925400-6928800	Genic enhancers	Spleen	Spleen

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