Variant report

Variant	rs10937774
Chromosome Location	chr4:6966302-6966303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6965177..6967591-chr4:6972240..6974882,2	MCF-7	breast:
2	chr4:6908690..6911062-chr4:6965419..6967593,2	MCF-7	breast:
3	chr4:6964971..6966612-chr4:6976027..6977681,2	MCF-7	breast:
4	chr4:6964966..6966973-chr4:6967560..6969658,4	MCF-7	breast:
5	chr4:6964718..6967361-chr4:6987942..6990285,2	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10012590	1.00[CHB][hapmap]
rs10025310	1.00[CHB][hapmap]
rs1048009	0.88[YRI][hapmap]
rs10516181	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10937776	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11732898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12502513	1.00[CHB][hapmap]
rs13122119	1.00[CHB][hapmap]
rs13135912	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2301817	1.00[CHB][hapmap]
rs2359194	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3188939	1.00[CHB][hapmap]
rs34219101	0.95[EUR][1000 genomes]
rs3857171	0.89[EUR][1000 genomes]
rs3892490	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs4234791	1.00[CHB][hapmap]
rs4296677	0.80[EUR][1000 genomes]
rs4428285	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4458452	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4544710	1.00[CHB][hapmap]
rs4645214	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4689059	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4689060	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4689560	1.00[CHB][hapmap]
rs4689568	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs4689573	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4689575	1.00[CHB][hapmap]
rs6816882	0.83[AMR][1000 genomes]
rs6818744	1.00[CHB][hapmap]
rs6831129	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6854776	1.00[CHB][hapmap]
rs6855531	0.85[AFR][1000 genomes]
rs7655563	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7655773	1.00[CHB][hapmap]
rs7658198	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes]
rs7661462	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661952	1.00[CHB][hapmap]
rs7675524	1.00[CHB][hapmap]
rs8180337	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
3	chr4:6946600-6969000	Weak transcription	Dnd41	blood
4	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:6956000-6967000	Weak transcription	Psoas Muscle	Psoas
6	chr4:6956000-6976000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:6956400-6969200	Weak transcription	K562	blood
8	chr4:6957600-6970400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:6957600-6973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:6957600-6976000	Weak transcription	Fetal Lung	lung
11	chr4:6957800-6976000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:6958400-6975800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:6958800-6967400	Weak transcription	Thymus	Thymus
14	chr4:6958800-6969400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:6959200-6968800	Weak transcription	Primary T cells from cord blood	blood
16	chr4:6959400-6967200	Weak transcription	Ovary	ovary
17	chr4:6962200-6969600	Weak transcription	Fetal Brain Female	brain
18	chr4:6962400-6967800	Enhancers	Fetal Muscle Leg	muscle
19	chr4:6962400-6968800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:6962600-6968200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:6962600-6968400	Enhancers	Liver	Liver
22	chr4:6963000-6966600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:6963000-6967400	Genic enhancers	Fetal Intestine Small	intestine
24	chr4:6963000-6968600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr4:6963200-6967400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr4:6963600-6967600	Enhancers	HepG2	liver
27	chr4:6963600-6968200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr4:6963800-6966400	Enhancers	Duodenum Mucosa	Duodenum
29	chr4:6963800-6968000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr4:6964000-6966800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:6964000-6967600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr4:6964000-6967600	Enhancers	Fetal Intestine Large	intestine
33	chr4:6964000-6967800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr4:6964200-6969000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:6964200-6969600	Weak transcription	Esophagus	oesophagus
36	chr4:6964200-6976000	Weak transcription	Brain Germinal Matrix	brain
37	chr4:6964400-6967000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:6964400-6968000	Enhancers	HSMM	muscle
39	chr4:6964600-6967400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:6964600-6967600	Enhancers	Spleen	Spleen
41	chr4:6964600-6968400	Enhancers	Brain Hippocampus Middle	brain
42	chr4:6964800-6967000	Enhancers	Brain Cingulate Gyrus	brain
43	chr4:6964800-6969400	Weak transcription	Fetal Stomach	stomach
44	chr4:6964800-6969600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:6964800-6973400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:6965000-6966800	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr4:6965000-6967200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:6965000-6967400	Flanking Active TSS	GM12878-XiMat	blood
49	chr4:6965000-6968800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:6965000-6969000	Weak transcription	Fetal Thymus	thymus

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