Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A9-1	chr10:61503942-61504002	ENSG00000227877.2

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10403224	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11880148	0.81[EUR][1000 genomes]
rs12978693	0.81[EUR][1000 genomes]
rs12978866	0.81[EUR][1000 genomes]
rs12981812	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1689182	0.81[EUR][1000 genomes]
rs2619705	0.80[EUR][1000 genomes]
rs582702	0.81[EUR][1000 genomes]
rs583659	0.81[EUR][1000 genomes]
rs586413	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs593522	0.83[EUR][1000 genomes]
rs594320	0.82[ASN][1000 genomes]
rs595145	0.83[EUR][1000 genomes]
rs595274	0.83[EUR][1000 genomes]
rs599438	0.80[EUR][1000 genomes]
rs603909	0.86[EUR][1000 genomes]
rs606617	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs610054	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs612285	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621906	0.84[EUR][1000 genomes]
rs628900	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs629359	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs638080	0.81[EUR][1000 genomes]
rs640001	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs640377	0.81[EUR][1000 genomes]
rs641702	0.81[EUR][1000 genomes]
rs642512	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs653426	0.81[EUR][1000 genomes]
rs653437	0.81[EUR][1000 genomes]
rs675277	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs679885	0.80[EUR][1000 genomes]
rs695017	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:61498200-61506200	Weak transcription	Stomach Mucosa	stomach
4	chr10:61498600-61507000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:61501800-61507400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:61503400-61504200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

Quick Search: