Variant report

Variant	rs6835219
Chromosome Location	chr4:165737056-165737057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10015558	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10021183	0.89[ASN][1000 genomes]
rs10025105	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11100578	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11100579	0.83[ASN][1000 genomes]
rs11736052	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12501150	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12501978	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12508855	0.83[ASN][1000 genomes]
rs12508868	0.82[ASN][1000 genomes]
rs12508887	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12509767	0.83[ASN][1000 genomes]
rs12509771	0.83[ASN][1000 genomes]
rs13113221	0.82[ASN][1000 genomes]
rs13125630	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13126028	0.89[ASN][1000 genomes]
rs13140317	0.81[ASN][1000 genomes]
rs28419510	0.83[ASN][1000 genomes]
rs28622475	0.82[ASN][1000 genomes]
rs35337094	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35776693	0.81[ASN][1000 genomes]
rs4234978	0.83[ASN][1000 genomes]
rs4234979	0.83[ASN][1000 genomes]
rs4280691	0.82[ASN][1000 genomes]
rs4518194	0.80[ASN][1000 genomes]
rs4572830	0.82[ASN][1000 genomes]
rs4619847	0.82[ASN][1000 genomes]
rs4621389	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4627813	0.85[ASN][1000 genomes]
rs4639025	0.89[ASN][1000 genomes]
rs4692010	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56265160	0.81[ASN][1000 genomes]
rs6828484	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9992767	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461821	chr4:165402309-165859951	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv596037	chr4:165402309-165859951	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv461822	chr4:165531034-165775547	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv596039	chr4:165531034-165775547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv830139	chr4:165619199-165789066	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv881252	chr4:165733052-165788605	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165729400-165743800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:165735800-165737400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:165736000-165737200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:165736000-165737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:165736200-165737200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:165736400-165737400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:165736600-165737200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:165736600-165737200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:165736600-165737400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:165736800-165737400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:165737000-165737600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:165737000-165741200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:165737000-165749000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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