Variant report

Variant	rs6835897
Chromosome Location	chr4:3081781-3081782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3081705..3083285-chr4:3084073..3086877,2	K562	blood:
2	chr4:3080079..3082972-chr4:3083884..3086818,3	MCF-7	breast:
3	chr4:3081667..3084518-chr4:3085377..3088342,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10002065	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10006129	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006977	0.93[EUR][1000 genomes]
rs10009229	0.93[EUR][1000 genomes]
rs10009935	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011127	0.93[EUR][1000 genomes]
rs10014333	0.93[EUR][1000 genomes]
rs10016755	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10034313	1.00[EUR][1000 genomes]
rs10222986	0.93[EUR][1000 genomes]
rs1419036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843857	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843866	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843869	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28377140	1.00[ASN][1000 genomes]
rs28387056	1.00[EUR][1000 genomes]
rs28393280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394705	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398130	1.00[ASN][1000 genomes]
rs28468636	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485764	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564368	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580164	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28583447	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28583552	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28584232	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28616835	1.00[ASN][1000 genomes]
rs28629394	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634516	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28652828	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28660254	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28670335	1.00[EUR][1000 genomes]
rs28682489	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696693	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28714390	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718346	0.93[EUR][1000 genomes]
rs28755900	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025836	0.87[EUR][1000 genomes]
rs3025837	1.00[ASN][1000 genomes]
rs363138	0.87[EUR][1000 genomes]
rs363140	1.00[ASN][1000 genomes]
rs4346595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60215756	1.00[ASN][1000 genomes]
rs6813198	1.00[ASN][1000 genomes]
rs6813223	1.00[ASN][1000 genomes]
rs6813958	1.00[ASN][1000 genomes]
rs6830019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856403	1.00[ASN][1000 genomes]
rs73792195	0.84[AFR][1000 genomes]
rs73792352	1.00[ASN][1000 genomes]
rs7436457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678336	1.00[ASN][1000 genomes]
rs7693317	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9994689	0.87[EUR][1000 genomes]
rs9995782	1.00[EUR][1000 genomes]
rs9996075	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3077400-3093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:3077800-3082400	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:3077800-3084400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:3077800-3089000	Weak transcription	Aorta	Aorta
5	chr4:3077800-3096400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:3078000-3082200	Enhancers	Primary B cells from cord blood	blood
7	chr4:3078000-3083400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr4:3078000-3084200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:3078000-3086200	Weak transcription	Placenta	Placenta
10	chr4:3078000-3086800	Weak transcription	Pancreas	Pancrea
11	chr4:3078000-3088000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:3078000-3088400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:3078000-3088600	Weak transcription	Lung	lung
14	chr4:3078000-3088800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:3078000-3088800	Weak transcription	Thymus	Thymus
16	chr4:3078000-3094600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:3078000-3094600	Weak transcription	Esophagus	oesophagus
18	chr4:3078000-3097400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:3078000-3097600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:3078000-3101000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:3078000-3103000	Weak transcription	Colonic Mucosa	Colon
22	chr4:3078200-3089000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:3078200-3089000	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:3078200-3094600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:3078200-3101000	Weak transcription	Brain Substantia Nigra	brain
26	chr4:3078200-3109800	Weak transcription	Stomach Mucosa	stomach
27	chr4:3078400-3085400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:3078400-3086800	Weak transcription	NHEK	skin
29	chr4:3078400-3091600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:3078400-3093200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:3078400-3094600	Weak transcription	A549	lung
32	chr4:3078400-3097000	Weak transcription	Brain Anterior Caudate	brain
33	chr4:3078400-3102200	Weak transcription	Hela-S3	cervix
34	chr4:3078400-3107000	Weak transcription	HMEC	breast
35	chr4:3078600-3082600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:3078600-3084200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:3078600-3085400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr4:3078600-3085800	Enhancers	Primary hematopoietic stem cells	blood
39	chr4:3078600-3086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:3078600-3088200	Weak transcription	Fetal Stomach	stomach
41	chr4:3078600-3088400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:3078600-3088400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:3078600-3088600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:3078600-3088600	Weak transcription	NH-A	brain
45	chr4:3078600-3088600	Weak transcription	Osteobl	bone
46	chr4:3078600-3088800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:3078600-3088800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr4:3078600-3088800	Weak transcription	Adipose Nuclei	Adipose
49	chr4:3078600-3088800	Weak transcription	HUVEC	blood vessel
50	chr4:3078600-3089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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