Variant report

Variant	rs73792195
Chromosome Location	chr4:3124095-3124096
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3122978..3125681-chr4:3127694..3131057,3	K562	blood:
2	chr4:3112929..3115298-chr4:3124048..3126368,4	MCF-7	breast:
3	chr4:3123809..3125858-chr4:3463615..3466530,2	MCF-7	breast:
4	chr4:3112475..3121644-chr4:3122211..3126506,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197386	Chromatin interaction
ENSG00000175920	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1419036	0.93[AFR][1000 genomes]
rs16843871	0.83[AMR][1000 genomes]
rs16843939	0.83[AMR][1000 genomes]
rs16843945	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28393280	0.84[AFR][1000 genomes]
rs3025796	1.00[ASN][1000 genomes]
rs3025831	1.00[ASN][1000 genomes]
rs3025838	0.83[AMR][1000 genomes]
rs3025852	0.83[AMR][1000 genomes]
rs3025853	0.83[AMR][1000 genomes]
rs362294	1.00[ASN][1000 genomes]
rs4346595	0.84[AFR][1000 genomes]
rs56021098	0.83[AMR][1000 genomes]
rs56134819	0.83[AMR][1000 genomes]
rs56148664	0.83[AMR][1000 genomes]
rs57792935	0.83[AMR][1000 genomes]
rs57875258	0.83[AMR][1000 genomes]
rs6835897	0.84[AFR][1000 genomes]
rs6836289	0.83[AMR][1000 genomes]
rs73074852	1.00[ASN][1000 genomes]
rs7436457	0.84[AFR][1000 genomes]
rs7442144	1.00[AMR][1000 genomes]
rs7667172	0.83[AMR][1000 genomes]
rs7681277	1.00[ASN][1000 genomes]
rs7698150	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3088200-3164200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr4:3097200-3143400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:3097200-3162200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:3097400-3163800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:3098000-3162600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:3100000-3159400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:3101000-3124200	Strong transcription	Fetal Intestine Large	intestine
8	chr4:3101000-3124400	Strong transcription	Thymus	Thymus
9	chr4:3101600-3124200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:3105400-3124800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:3106400-3145000	Strong transcription	Dnd41	blood
12	chr4:3106800-3125200	Strong transcription	Primary B cells from cord blood	blood
13	chr4:3108600-3125800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:3108600-3136600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:3108600-3163000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:3108800-3164600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:3109000-3124200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:3109200-3142600	Strong transcription	GM12878-XiMat	blood
19	chr4:3109400-3124600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr4:3109400-3130400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:3111600-3125400	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr4:3112600-3124200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:3112800-3124200	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr4:3113800-3124200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:3114600-3292400	Weak transcription	Right Atrium	heart
26	chr4:3114800-3162800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:3115800-3143400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:3115800-3161600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:3115800-3162800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:3116000-3136200	Strong transcription	Liver	Liver
31	chr4:3116600-3124200	Strong transcription	Brain Angular Gyrus	brain
32	chr4:3116600-3124400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:3116600-3124800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:3116800-3124200	Strong transcription	Brain Germinal Matrix	brain
35	chr4:3116800-3126000	Strong transcription	HepG2	liver
36	chr4:3117000-3125400	Strong transcription	Fetal Brain Female	brain
37	chr4:3117800-3129000	Weak transcription	Psoas Muscle	Psoas
38	chr4:3118200-3128600	Weak transcription	Small Intestine	intestine
39	chr4:3118400-3133600	Weak transcription	Hela-S3	cervix
40	chr4:3118600-3124600	Weak transcription	Fetal Heart	heart
41	chr4:3118600-3128400	Weak transcription	Fetal Brain Male	brain
42	chr4:3118600-3128800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:3118800-3132200	Weak transcription	K562	blood
44	chr4:3119000-3133000	Weak transcription	HMEC	breast
45	chr4:3119800-3128600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:3120400-3128600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr4:3120400-3128600	Weak transcription	Spleen	Spleen
48	chr4:3121200-3124200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:3121400-3124200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:3121400-3124200	Strong transcription	Fetal Intestine Small	intestine

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