Variant report

Variant	rs6836961
Chromosome Location	chr4:10064824-10064825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:10020071..10021146-chr4:10064556..10066056,33	MCF-7	breast:
2	chr4:10061810..10065204-chr4:10068602..10071736,4	MCF-7	breast:
3	chr4:10060964..10064937-chr4:10066932..10071092,4	K562	blood:
4	chr4:10008558..10010473-chr4:10063451..10065782,2	MCF-7	breast:
5	chr4:10063533..10065556-chr4:10116961..10119928,2	K562	blood:

Variant related genes	Relation type
ENSG00000071127	Chromatin interaction
ENSG00000109667	Chromatin interaction
ENSG00000223086	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10516202	0.81[EUR][1000 genomes]
rs10516203	0.81[EUR][1000 genomes]
rs10516204	0.81[EUR][1000 genomes]
rs10939679	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10939680	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10939681	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11723250	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11724184	0.81[EUR][1000 genomes]
rs11727367	0.81[EUR][1000 genomes]
rs11727418	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12108388	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12498746	0.83[EUR][1000 genomes]
rs12509082	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12509609	0.83[EUR][1000 genomes]
rs12511989	0.91[ASN][1000 genomes]
rs12512525	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12642426	0.81[EUR][1000 genomes]
rs13112782	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13118272	0.83[EUR][1000 genomes]
rs13127630	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13141629	0.83[EUR][1000 genomes]
rs2241471	0.86[EUR][1000 genomes]
rs2241479	0.86[EUR][1000 genomes]
rs2241487	0.83[EUR][1000 genomes]
rs2303401	0.83[EUR][1000 genomes]
rs28730480	0.85[ASN][1000 genomes]
rs34426660	0.83[EUR][1000 genomes]
rs35865690	0.83[EUR][1000 genomes]
rs3756217	0.83[EUR][1000 genomes]
rs3775931	0.98[EUR][1000 genomes]
rs3775936	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3796820	0.81[EUR][1000 genomes]
rs3822238	0.83[EUR][1000 genomes]
rs4393996	0.81[EUR][1000 genomes]
rs4478188	0.86[EUR][1000 genomes]
rs4549382	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4572881	0.81[EUR][1000 genomes]
rs737678	0.86[EUR][1000 genomes]
rs7659924	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7677430	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7677939	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7678346	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7683832	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
6	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
16	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
19	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
20	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
21	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
22	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
24	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
25	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
27	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
30	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
32	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
33	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
34	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
35	nsv878692	chr4:10042160-10099333	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
36	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10035200-10065600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:10035400-10065200	Weak transcription	Right Ventricle	heart
3	chr4:10035800-10068400	Weak transcription	Aorta	Aorta
4	chr4:10041000-10065000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:10048200-10065400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:10050000-10065000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:10050000-10066400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:10051000-10068200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:10051400-10076200	Weak transcription	Small Intestine	intestine
10	chr4:10052200-10067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:10053800-10065000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:10054600-10068600	Weak transcription	Gastric	stomach
13	chr4:10056400-10065000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:10056400-10065200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:10056600-10065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:10056600-10074000	Weak transcription	HUVEC	blood vessel
17	chr4:10056800-10065000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:10056800-10065200	Weak transcription	Esophagus	oesophagus
19	chr4:10056800-10067800	Weak transcription	HSMM	muscle
20	chr4:10057000-10065200	Weak transcription	NHLF	lung
21	chr4:10057200-10065000	Weak transcription	Right Atrium	heart
22	chr4:10057200-10065000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:10057200-10065200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:10057200-10065400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:10058000-10068400	Weak transcription	Psoas Muscle	Psoas
26	chr4:10058600-10065600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:10058800-10066800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:10058800-10068600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:10059000-10065200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:10059000-10065200	Weak transcription	Left Ventricle	heart
31	chr4:10059000-10065200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:10059200-10065400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:10060400-10065200	Weak transcription	Thymus	Thymus
34	chr4:10060800-10065000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:10060800-10065200	Weak transcription	Primary B cells from cord blood	blood
36	chr4:10060800-10065200	Weak transcription	Fetal Intestine Small	intestine
37	chr4:10060800-10065200	Weak transcription	Lung	lung
38	chr4:10060800-10067200	Weak transcription	Spleen	Spleen
39	chr4:10060800-10068600	Weak transcription	Ovary	ovary
40	chr4:10061000-10065000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:10061000-10066600	Weak transcription	NH-A	brain
42	chr4:10061000-10066800	Weak transcription	Fetal Intestine Large	intestine
43	chr4:10061200-10067600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:10062000-10070600	Weak transcription	NHDF-Ad	bronchial
45	chr4:10062200-10068000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:10062200-10069400	Weak transcription	GM12878-XiMat	blood
47	chr4:10062400-10071600	Strong transcription	Primary T cells from cord blood	blood
48	chr4:10062600-10071600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr4:10063000-10065000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:10063000-10071400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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