Variant report

Variant	rs6842245
Chromosome Location	chr4:110763930-110763931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110750840..110753466-chr4:110761296..110764201,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10020617	0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10022841	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516559	0.81[CEU][hapmap]
rs11937249	0.94[CHB][hapmap]
rs12500239	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12504835	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12510851	0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12513108	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643147	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12644142	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13107617	0.94[CHB][hapmap]
rs13109228	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112387	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13128244	0.81[CEU][hapmap]
rs13128301	0.94[CHB][hapmap]
rs13129185	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13140289	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13141065	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13150454	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1860130	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2347130	0.87[CEU][hapmap]
rs2347131	0.81[CEU][hapmap]
rs2347132	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs34378309	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34706258	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34717063	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34734592	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35426158	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36101562	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775961	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4353905	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4422417	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4610335	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4698749	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4698750	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4698795	0.81[CEU][hapmap]
rs6814743	0.93[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6858351	0.81[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7442158	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7657133	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678178	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7684459	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7698794	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9993509	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110742200-110764400	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
4	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
5	chr4:110746400-110764000	Weak transcription	Primary B cells from cord blood	blood
6	chr4:110746800-110767600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:110757800-110772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:110760600-110766800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:110763400-110771800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links