Variant report

Variant	rs13112387
Chromosome Location	chr4:110770664-110770665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110733962..110737774-chr4:110769396..110773000,3	K562	blood:
2	chr4:110764137..110765639-chr4:110769412..110771941,2	K562	blood:

Variant related genes	Relation type
ENSG00000272795	Chromatin interaction
ENSG00000109534	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10020617	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10022841	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10516559	0.83[EUR][1000 genomes]
rs11098049	0.83[ASN][1000 genomes]
rs12498239	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12500239	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504835	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12508179	0.90[ASN][1000 genomes]
rs12510851	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12513108	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12643147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12644142	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13109228	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13115969	0.90[ASN][1000 genomes]
rs13128244	0.83[EUR][1000 genomes]
rs13129185	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13140289	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13141065	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13150454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1860130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078040	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2347130	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2347131	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2347132	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2347133	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34377477	0.83[EUR][1000 genomes]
rs34378309	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34706258	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34717063	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34734592	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35043368	0.82[AMR][1000 genomes]
rs35426158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101562	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3775961	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4353905	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4422417	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4610335	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4698749	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4698750	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698795	0.83[EUR][1000 genomes]
rs62324955	0.83[EUR][1000 genomes]
rs6814655	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6814743	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816185	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6841737	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6842245	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6858351	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7442158	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7657133	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7678178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684459	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7698794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993509	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
2	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110757800-110772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:110763400-110771800	Weak transcription	Pancreas	Pancrea
5	chr4:110769600-110771800	Weak transcription	Liver	Liver
6	chr4:110770600-110775800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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