Variant report

Variant	rs11098049
Chromosome Location	chr4:110776999-110777000
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12498239	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12500239	0.81[ASN][1000 genomes]
rs12504835	0.81[ASN][1000 genomes]
rs12508179	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643147	0.81[ASN][1000 genomes]
rs12644142	0.81[ASN][1000 genomes]
rs13112387	0.83[ASN][1000 genomes]
rs13115969	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13125596	0.81[EUR][1000 genomes]
rs13140289	0.81[ASN][1000 genomes]
rs1860130	0.83[ASN][1000 genomes]
rs2078040	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2347130	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2347131	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2347132	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2347133	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34378309	0.81[ASN][1000 genomes]
rs34706258	0.83[ASN][1000 genomes]
rs35043368	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35426158	0.83[ASN][1000 genomes]
rs4353905	0.81[ASN][1000 genomes]
rs4610335	0.81[ASN][1000 genomes]
rs4698750	0.83[ASN][1000 genomes]
rs4698751	0.80[EUR][1000 genomes]
rs4698799	0.82[EUR][1000 genomes]
rs6814655	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814743	0.83[ASN][1000 genomes]
rs6816185	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6841737	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6858351	0.83[ASN][1000 genomes]
rs7678178	0.83[ASN][1000 genomes]
rs7698794	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11098049	RRH	cis	temporal cortex	BrainEAC
rs11098049	RRH	cis	inferior olivary nucleus	BrainEAC
rs11098049	RRH	cis	brain	BrainEAC

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110773600-110779400	Weak transcription	Liver	Liver
2	chr4:110773600-110780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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